Evidence map›Paper›PMID 14610275›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

A dinucleotide motif in oligonucleotides shows potent immunomodulatory activity and overrides species-specific recognition observed with CpG motif.

Ekambar R Kandimalla, Lakshmi Bhagat, Fu-Gang Zhu, Dong Yu, Yan-Ping Cong, Daqing Wang, Jimmy X Tang, Jin-Yan Tang, Cathrine F Knetter, Egil Lien and 1 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
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  5. Article
  6. Coadministration of telomerase genetic vaccine and a novel TLR9 agonist in nonhuman primates.Molecular therapy : the journal of the American Society of Gene Therapy · 2009
    Article
  7. Article
  8. Review
  9. Broad-spectrum drugs against viral agents.International journal of molecular sciences · 2008
    Article
  10. Stabilized immune modulatory RNA compounds as agonists of Toll-like receptors 7 and 8.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Ekambar R KandimallaHybridon, Inc., 345 Vassar Street, Cambridge, MA 02139, USA.
Lakshmi Bhagat
Fu-Gang Zhu
Dong Yu
Yan-Ping Cong
Daqing Wang
Jimmy X Tang
Jin-Yan Tang
Cathrine F Knetter
Egil Lien
Sudhir Agrawal
University of Massachusetts Chan Medical School · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial and synthetic DNAs containing CpG dinucleotides in specific sequence contexts activate the vertebrate immune system through Toll-like receptor 9 (TLR9). In the present study, we used a synthetic nucleoside with a bicyclic heterobase [1-(2'-deoxy-beta-d-ribofuranosyl)-2-oxo-7-deaza-8-methyl-purine; R] to replace the C in CpG, resulting in an RpG dinucleotide. The RpG dinucleotide was incorporated in mouse- and human-specific motifs in oligodeoxynucleotides (oligos) and 3'-3-linked oligos, referred to as immunomers. Oligos containing the RpG motif induced cytokine secretion in mouse spleen-cell cultures. Immunomers containing RpG dinucleotides showed activity in transfected-HEK293 cells stably expressing mouse TLR9, suggesting direct involvement of TLR9 in the recognition of RpG motif. In J774 macrophages, RpG motifs activated NF-kappa B and mitogen-activated protein kinase pathways. Immunomers containing the RpG dinucleotide induced high levels of IL-12 and IFN-gamma, but lower IL-6 in time- and concentration-dependent fashion in mouse spleen-cell cultures costimulated with IL-2. Importantly, immunomers containing GTRGTT and GARGTT motifs were recognized to a similar extent by both mouse and human immune systems. Additionally, both mouse- and human-specific RpG immunomers potently stimulated proliferation of peripheral blood mononuclear cells obtained from diverse vertebrate species, including monkey, pig, horse, sheep, goat, rat, and chicken. An immunomer containing GTRGTT motif prevented conalbumin-induced and ragweed allergen-induced allergic inflammation in mice. We show that a synthetic bicyclic nucleotide is recognized in the C position of a CpG dinucleotide by immune cells from diverse vertebrate species without bias for flanking sequences, suggesting a divergent nucleotide motif recognition pattern of TLR9.

Indexed as

Adjuvants, ImmunologicAllergensAnimalsBase SequenceCell LineCells, CulturedCytokinesDNA-Binding ProteinsDrug DesignFemaleHumansKineticsMAP Kinase Signaling SystemMiceMice, Inbred BALB COligodeoxyribonucleotidesAdjuvants, ImmunologicAllergensCPG-oligonucleotideCytokinesDNA-Binding ProteinsOligodeoxyribonucleotidesReceptors, Cell SurfaceTLR9 protein, humanTlr9 protein, mouseToll-Like Receptor 9

Identifiers

PMID14610275
PMCPMC283587
OpenAlexW2033063638

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.