ArticlePlant physiology2003
A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development.
Article in Plant physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 58 papers, 1 of them a synthesis that pooled it.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
58 citing papers in PubMed, 1 synthesis or guideline pooled it, 119 citations in OpenAlex.
- Transcriptomic Data Meta-Analysis Sheds Light on High Light Response inInternational journal of molecular sciences · 2022Pooled it
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- Beware of Sealing Film of Petri Dishes!-Alters the Expression of a Large Number of Genes.International journal of molecular sciences · 2025Article
- The resistance ofPhotosynthetica · 2025Article
- Genome-wide characterization and expression analysis of GATA transcription factors under combination of light wavelengths and drought stress in potato.Plant direct · 2024Article
- Genome-Wide Identification and Characterization of the Biosynthesis of the Polyamine Gene Family inGenes · 2023Article
- Effect of Light Quality on Metabolomic, Ionomic, and Transcriptomic Profiles in Tomato Fruit.International journal of molecular sciences · 2022Article
- The bud dormancy disconnect: latent buds of grapevine are dormant during summer despite a high metabolic rate.Journal of experimental botany · 2022Article
- EndophyticFrontiers in microbiology · 2021Article
- Molecular changes in Mesembryanthemum crystallinum guard cells underlying the CPlant molecular biology · 2020Article
- Genome-wide identification of Arabidopsis long noncoding RNAs in response to the blue light.Scientific reports · 2020Article
- Genome-wide association and epistatic interactions of flowering time in soybean cultivar.PloS one · 2020Article
- Article
- Using light to improve commercial value.Horticulture research · 2018Article
- Transcriptome Analyses of Two Citrus Cultivars (Shiranuhi and Huangguogan) in Seedling Etiolation.Scientific reports · 2017Article
- Making the clock tick: the transcriptional landscape of the plant circadian clock.F1000Research · 2017Review
- RNA-seq analysis of the transcriptional response to blue and red light in the extremophilic red alga, Cyanidioschyzon merolae.Functional & integrative genomics · 2016Article
- Article
- Large-scale comparative phosphoprotein analysis of maize seedling leaves during greening.Planta · 2016Article
- Article
Corrections and comments
- Erratum issued
Authors and funding
14 authors at 3 institutions in 3 countries.
Funding
Abstract
A microarray based on PCR amplicons of 1864 confirmed and predicted Arabidopsis transcription factor genes was produced and used to profile the global expression pattern in seedlings, specifically their light regulation. We detected expression of 1371 and 1241 genes in white-light- and dark-grown 6-d-old seedlings, respectively. Together they account for 84% of the transcription factor genes examined. This array was further used to study the kinetics of transcription factor gene expression change of dark-grown seedlings in response to blue light and the role of specific photoreceptors in this blue-light regulation. The expression of about 20% of those transcription factor genes are responsive to blue-light exposure, with 249 and 115 genes up or down-regulated, respectively. A large portion of blue-light-responsive transcription factor genes exhibited very rapid expression changes in response to blue light, earlier than the bulk of blue-light-regulated genes. This result suggests the involvement of transcription cascades in blue-light control of genome expression. Comparative analysis of the expression profiles of wild type and various photoreceptor mutants demonstrated that during early seedling development cryptochromes are the major photoreceptors for blue-light control of transcription factor gene expression, whereas phytochrome A and phototropins play rather limited roles.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.