Evidence map›Paper›PMID 14602932›Full record

ArticleNucleic acids research2003

Direct measurement of lymphocyte receptor diversity.

Brenda M Ogle, Marilia Cascalho, Cristina Joao, William Taylor, Lori J West, Jeffrey L Platt

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  4. Escaping from rejection.Transplantation · 2009
    Review
  5. Lessons from cardiac transplantation in infancy.Pediatric transplantation · 2009
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. B cells and B cell products-helping to restore cellular immunity?Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Brenda M OgleTransplantation Biology Program, Department of Physiology, Mayo Clinic, Rochester, Minnesota, MN 55905, USA.
Marilia Cascalho
Cristina Joao
William Taylor
Lori J West
Jeffrey L Platt
Mayo Clinic · US

Funding

Xenogeneic Natural Antibody Targets-Structure/FunctionR37HL052297 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PLATT, JEFFREY L · 2001 to 2010
$3.9M
HEPARAN SULFATE IN CELLULAR IMMUNITY AND GRAFT REJECTIONR01HL046810 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI PLATT, JEFFREY L · 1991 to 2003
$1.4M
XENOGENEIC NATURAL ANTIBODY TARGETS--STRUCTURE/FUNCTIONR01HL052297 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI PLATT, JEFFREY L · 1993 to 2000
$319k
NHLBI NIH HHS HL46810NHLBI NIH HHS HL52297NHLBI NIH HHS R01 HL046810NHLBI NIH HHS R01 HL052297NHLBI NIH HHS R37 HL052297
6 · The paper itself

Abstract

The ability to mount an immune defense against infectious microorganisms and their products, and against tumors is believed to be a direct function of lymphocyte diversity. Because the diversity of lymphocyte receptor genes is >1000-fold more diverse than the entire genome and varies between genetically identical individuals, measuring lymphocyte diversity has been a daunting challenge. We developed a novel technique for measuring lymphocyte diversity directly using gene chips. We reasoned and here demonstrate that the frequency of hybridization of nucleic acids coding for lymphocyte receptors to the oligonucleotides on a gene chip varies in direct proportion to diversity. We applied the technique to detect changes in lymphocyte diversity in mice with known B cell alterations and in persons with known T cell repertoire defects. This approach is the first to provide direct analysis of lymphocyte receptor diversity and should facilitate fundamental study of the adaptive immune system and clinical efforts to assess immunological diseases. In addition, this approach could be more broadly applied, for example to measure diversity of viral quasi-species.

Indexed as

AdultAnimalsAntibody DiversityGene RearrangementHumansImmunoglobulin Heavy ChainsJurkat CellsLymphocytesMiceMice, Inbred C57BLMice, KnockoutMiddle AgedMutationOligonucleotide Array Sequence AnalysisReceptors, AntigenReceptors, Antigen, B-CellImmunoglobulin Heavy ChainsReceptors, AntigenReceptors, Antigen, B-CellReceptors, Antigen, T-CellRNARNA, Complementary

Identifiers

PMID14602932
PMCPMC275576
OpenAlexW2023159875

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.