Evidence map›Paper›PMID 14602908›Full record

ArticleNucleic acids research2003

Arginine/serine repeats are sufficient to constitute a splicing activation domain.

Dana Philipps, Alicia M Celotto, Qiao-Qiao Wang, Rosa S Tarng, Brenton R Graveley

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  6. Function of BCLAF1 in human disease.Oncology letters · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Dana PhilippsDepartment of Genetics and Developmental Biology, University of Connecticut Health Center, 263 Farmington Avenue, Farmington, CT 06030-3301, USA.
Alicia M Celotto
Qiao-Qiao Wang
Rosa S Tarng
Brenton R Graveley
UConn Health · US

Funding

The Mechanisms and Regulatory Networks of Alternative Splicing in DrosophilaR01GM062516 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2001 to 2009
$2.6M
NIGMS NIH HHS GM062516NIGMS NIH HHS R01 GM062516
6 · The paper itself

Abstract

SR proteins are essential pre-mRNA splicing factors that have been shown to bind a number of exonic splicing enhancers where they function to stimulate the splicing of adjacent introns. Members of the SR protein family contain one or two N-terminal RNA binding domains, as well as a C-terminal arginine-serine (RS) rich domain. The RS domains mediate protein-protein interactions with other RS domain containing proteins and are essential for many, but not all, SR protein functions. Hybrid proteins containing an RS domain fused to the bacteriophage MS2 coat protein are sufficient to activate enhancer-dependent splicing in HeLa cell nuclear extract when bound to the pre-mRNA. Here we report progress towards determining the protein sequence requirements for RS domain function. We show that the RS domains from non-SR proteins can also function as splicing activation domains when tethered to the pre-mRNA. Truncation experiments with the RS domain of the human SR protein 9G8 identified a 29 amino acid segment, containing 26 arginine or serine residues, that is sufficient to activate splicing when fused to MS2. We also show that synthetic domains composed solely of RS dipeptides are capable of activating splicing, although their potency is proportional to their size.

Indexed as

RNA SplicingAmino Acid SequenceAnimalsArginineCapsid ProteinsCell LineHeLa CellsHumansMolecular Sequence DataMutationNuclear ProteinsRecombinant Fusion ProteinsRepetitive Sequences, Nucleic AcidRibonucleoproteinsRibonucleoprotein, U1 Small NuclearRNA-Binding ProteinsArginineCapsid ProteinsNuclear ProteinsRecombinant Fusion ProteinsRibonucleoproteinsRibonucleoprotein, U1 Small NuclearRNA-Binding ProteinsRNA PrecursorsSerineSNRNP70 protein, humanSplicing Factor U2AFU2AF1 protein, humanU2AF2 protein, human

Identifiers

PMID14602908
PMCPMC275541
OpenAlexW1975560388

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.