Evidence map›Paper›PMID 14593427›Full record

ArticleMolecular psychiatry2003

Polymorphisms in the 5'-untranslated region of the human serotonin receptor 1B (HTR1B) gene affect gene expression.

J Duan, A R Sanders, J E Vander Molen, L Martinolich, B J Mowry, D F Levinson, R R Crowe, J M Silverman, P V Gejman

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular psychiatry, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 95 citations in OpenAlex.

  1. Associations of the 5-hydroxytryptamine (serotonin) receptor 1B gene (HTR1B) with alcohol, cocaine, and heroin abuse.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2013
    Pooled it
  2. Article
  3. Article
  4. Understanding the Molecular Regulation of Serotonin Receptor 5-HTRJournal of molecular neuroscience : MN · 2023
    Article
  5. Article
  6. Genes · 2021
    Article
  7. Article
  8. Article
  9. The association betweenNeuropsychiatric disease and treatment · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Role of the serotonergic system in alcohol dependence: from animal models to clinics.Progress in molecular biology and translational science · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 2 countries.

J DuanCenter for Psychiatric Genetics, Evanston Northwestern Healthcare (ENH) Research Institute, ENH & Northwestern University, Evanston, IL 60206, USA.
A R Sanders
J E Vander Molen
L Martinolich
B J Mowry
D F Levinson
R R Crowe
J M Silverman
P V Gejman
NorthShore University HealthSystem · USUniversity of Chicago · USIcahn School of Medicine at Mount Sinai · USNorthwestern University · USPark Centre for Mental Health · AUUniversity of Iowa · USUniversity of Pennsylvania · US

Funding

DIAGNOSTIC CENTER FOR LINKAGE STUDIES OF SCHIZOPHRENIAU01MH046276 · NIMH · WASHINGTON UNIVERSITY · PI CLONINGER, C. ROBERT · 1989 to 1996
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DIAGNOSTIC CENTER FOR SCHIZOPHRENIA LINKAGE STUDIESU01MH046289 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI KAUFMANN, CHARLES A · 1989 to 1996
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LINKAGE STUDIES OF SCHIZOPHRENIAU01MH046318 · NIMH · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI TSUANG, MING T. · 1989 to 1996
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NIMH NIH HHS U01 MH46276NIMH NIH HHS U01 MH46289NIMH NIH HHS U01 MH46318
6 · The paper itself

Abstract

We present evidence of complex balancing regulation of HTR1B transcription by common polymorphisms in its promoter. Computational analysis of the HTR1B gene predicted that a 5' segment, spanning common DNA sequence variations, T-261G, A-161T, and -182INS/DEL-181, contained a putative functional promoter. Using a secreted alkaline phosphatase (SEAP) reporter gene system, we found that the haplotype -261G_-182INS-181_A-161 enhanced transcriptional activity 2.3-fold compared with the haplotype T-261_-182INS-181_A-161. Conversely, -161T reversed this, and the net effect when -261G and -161T were in the same haplotype (-261G_-182INS-181_-161T) was equivalent to the major haplotype (T-261_-182INS-181_A-161). Electrophoretic mobility shift experiments showed that -261G and -161T modify the binding of transcription factors (TFs): -261G generates a new AP2 binding site, while alleles A-161 and -161T exhibit different binding characteristics to AP1. T-261G and A-161T were found to be in linkage disequilibrium (LD) with G861C in a European ancestry population. Interestingly, G861C has been reported to be associated with several psychiatric disorders. Our results indicate that HTR1B is the target of substantial transcriptional genetic regulation by common haplotypes, which are in LD with the HTR1B single-nucleotide polymorphism (SNP) most commonly used in association studies.

Indexed as

Polymorphism, Single Nucleotide5' Untranslated RegionsAnimalsCHO CellsCricetinaeGene ExpressionGene FrequencyHaplotypesHumansLinkage DisequilibriumOligonucleotidesPromoter Regions, GeneticReceptor, Serotonin, 5-HT1BSchizophreniaTranscriptional ActivationTranscription Factor AP-15' Untranslated RegionsHTR1B protein, humanOligonucleotidesReceptor, Serotonin, 5-HT1BTranscription Factor AP-1

Identifiers

PMID14593427
OpenAlexW2080719046

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.