Evidence map›Paper›PMID 14581606›Full record

ArticleThe Journal of experimental medicine2003

Plasticity of repetitive DNA sequences within a bacterial (Type IV) secretion system component.

Rahul A Aras, Wolfgang Fischer, Guillermo I Perez-Perez, MariaLuisa Crosatti, Takafumi Ando, Rainer Haas, Martin J Blaser

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
9.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Article
  3. Roles of the components of theFuture microbiology · 2024
    Review
  4. A Proposal for a Consolidated Structural Model of the CagY Protein ofInternational journal of molecular sciences · 2023
    Article
  5. Article
  6. Canadian journal of gastroenterology & hepatology · 2022
    Article
  7. Transcriptional Profile ofThe Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2021
    Article
  8. Article
  9. Article
  10. Defining theFrontiers in microbiology · 2020
    Article
  11. α-Difluoromethylornithine reduces gastric carcinogenesis by causing mutations inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Rahul A ArasDepartment of Medicine, New York University School of Medicine, and VA Medical Center, NY 10016, USA. aras@cshl.edu
Wolfgang Fischer
Guillermo I Perez-Perez
MariaLuisa Crosatti
Takafumi Ando
Rainer Haas
Martin J Blaser
New York University · USInstitute of Medical Microbiology and Hygiene · DENagoya University · JP

Funding

INFECTIOUS DISEASES &BASIC MICROBIOLOGICAL MECHANISMST32AI007180 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 1985 to 2022
$8.9M
VIRUSES, NUCLEIC ACIDS, GROWTH, AND CANCERT32CA009385 · NCI · VANDERBILT UNIVERSITY · PI RULEY, HENRY EARL · 1985 to 2007
$4.1M
MATHEMATICAL MODELS OF H PYLORI GASTRIC COLONIZATIONR01GM063270 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BLASER, MARTIN J · 2000 to 2013
$3.1M
NCI NIH HHS 5 T32 CA09385NCI NIH HHS T32 CA009385NIAID NIH HHS 5 T32 AI07180-20NIAID NIH HHS T32 AI007180NIGMS NIH HHS R01 GM063270NIGMS NIH HHS R01 GM63270
6 · The paper itself

Abstract

DNA rearrangement permits bacteria to regulate gene content and expression. In Helicobacter pylori, cagY, which contains an extraordinary number of direct DNA repeats, encodes a surface-exposed subunit of a (type IV) bacterial secretory system. Examining potential DNA rearrangements involving the cagY repeats indicated that recombination events invariably yield in-frame open reading frames, producing alternatively expressed genes. In individual hosts, H. pylori cell populations include strains that produce CagY proteins that differ in size, due to the predicted in-frame deletions or duplications, and elicit minimal or no host antibody recognition. Using repetitive DNA, H. pylori rearrangements in a host-exposed subunit of a conserved bacterial secretion system may permit a novel form of antigenic evasion.

Indexed as

Repetitive Sequences, Nucleic AcidBacterial ProteinsBase SequenceDNA, BacterialDNA PrimersHelicobacter pyloriBacterial ProteinsDNA, BacterialDNA Primers

Identifiers

PMID14581606
PMCPMC2194252
OpenAlexW2113334875

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.