Evidence map›Paper›PMID 14581567›Full record

ArticleJournal of virology2003

Structure and function of CC-chemokine receptor 5 homologues derived from representative primate species and subspecies of the taxonomic suborders Prosimii and Anthropoidea.

Kevin J Kunstman, Bridget Puffer, Bette T Korber, Carla Kuiken, Una R Smith, Jennifer Kunstman, Jennifer Stanton, Michael Agy, Riri Shibata, Anne D Yoder and 4 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Kevin J KunstmanDepartment of Medicine, The Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA.
Bridget Puffer
Bette T Korber
Carla Kuiken
Una R Smith
Jennifer Kunstman
Jennifer Stanton
Michael Agy
Riri Shibata
Anne D Yoder
Satish Pillai
Robert W Doms
Preston Marx
Steven M Wolinsky
Los Alamos National Laboratory · USUniversity of Pennsylvania · USNational Institute of Allergy and Infectious Diseases · USNorthwestern University · USTulane Medical Center · USUniversity of Washington · US

Funding

SECOND RECEPTORS FOR PRIMATE IMMUNODEFICIENCY VIRUSESR01AI041420 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOORE, JOHN P · 1997 to 2015
$7.3M
HIV entry and its inhibitionR01AI040880 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DOMS, ROBERT W. · 1997 to 2010
$4.2M
VIRAL AND T CELL DYNAMICS IN HIV 1 INFECTED CHILDRENR01HD037356 · NICHD · NORTHWESTERN UNIVERSITY · PI WOLINSKY, STEVEN M · 1999 to 2003
$2.0M
NIAID NIH HHS AI40880NIAID NIH HHS AI41420NIAID NIH HHS R01 AI040880NIAID NIH HHS R01 AI041420NICHD NIH HHS HD37356NICHD NIH HHS R01 HD037356
6 · The paper itself

Abstract

A chemokine receptor from the seven-transmembrane-domain G-protein-coupled receptor superfamily is an essential coreceptor for the cellular entry of human immunodeficiency virus type 1 (HIV-1) and simian immunodeficiency virus (SIV) strains. To investigate nonhuman primate CC-chemokine receptor 5 (CCR5) homologue structure and function, we amplified CCR5 DNA sequences from peripheral blood cells obtained from 24 representative species and subspecies of the primate suborders Prosimii (family Lemuridae) and Anthropoidea (families Cebidae, Callitrichidae, Cercopithecidae, Hylobatidae, and Pongidae) by PCR with primers flanking the coding region of the gene. Full-length CCR5 was inserted into pCDNA3.1, and multiple clones were sequenced to permit discrimination of both alleles. Compared to the human CCR5 sequence, the CCR5 sequences of the Lemuridae, Cebidae, and Cercopithecidae shared 87, 91 to 92, and 96 to 99% amino acid sequence homology, respectively. Amino acid substitutions tended to cluster in the amino and carboxy termini, the first transmembrane domain, and the second extracellular loop, with a pattern of species-specific changes that characterized CCR5 homologues from primates within a given family. At variance with humans, all primate species examined from the suborder Anthropoidea had amino acid substitutions at positions 13 (N to D) and 129 (V to I); the former change is critical for CD4-independent binding of SIV to CCR5. Within the Cebidae, Cercopithecidae, and Pongidae (including humans), CCR5 nucleotide similarities were 95.2 to 97.4, 98.0 to 99.5, and 98.3 to 99.3%, respectively. Despite this low genetic diversity, the phylogeny of the selected primate CCR5 homologue sequences agrees with present primate systematics, apart from some intermingling of species of the Cebidae and Cercopithecidae. Constructed HOS.CD4 cell lines expressing the entire CCR5 homologue protein from each of the Anthropoidea species and subspecies were tested for their ability to support HIV-1 and SIV entry and membrane fusion. Other than that of Cercopithecus pygerythrus, all CCR5 homologues tested were able to support both SIV and HIV-1 entry. Our results suggest that the shared structure and function of primate CCR5 homologue proteins would not impede the movement of primate immunodeficiency viruses between species.

Indexed as

Amino Acid SequenceAnimalsHaplorhiniHIV-1HumansMembrane FusionMolecular Sequence DataPhylogenyReceptors, CCR5Sequence HomologySimian Immunodeficiency VirusStrepsirhiniReceptors, CCR5

Identifiers

PMID14581567
PMCPMC254294
OpenAlexW2129474485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.