Evidence map›Paper›PMID 14579105›Full record

ArticleImmunogenetics2003

Terminal deoxynucleotidyl transferases from elasmobranchs reveal structural conservation within vertebrates.

Simona Bartl, Ann L Miracle, Lynn L Rumfelt, Thomas B Kepler, Evonne Mochon, Gary W Litman, Martin F Flajnik

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Immunogenetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Simona BartlMoss Landing Marine Laboratories, 8272 Moss Landing Road, CA 95039, Moss Landing, USA. sbartl@mlml.calstate.edu
Ann L Miracle
Lynn L Rumfelt
Thomas B Kepler
Evonne Mochon
Gary W Litman
Martin F Flajnik
University of Maryland, Baltimore · USUniversity of South Florida St. Petersburg · USInstitute of Bioinformatics · INMoss Landing Marine Laboratories · US

Funding

EVOLUTION OF THE MAJOR HISTOCOMPATIBILITY COMPLEXR01RR006603 · NCRR · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FLAJNIK, MARTIN F · 1991 to 2011
$3.4M
EARLY EVOLUTIONARY ORIGINS OF IMMUNOGLOBULIN GENESR37AI023338 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI LITMAN, GARY W · 1995 to 2003
$1.6M
NCRR NIH HHS RR06603NIAID NIH HHS R37 AI23338
6 · The paper itself

Abstract

The DNA polymerase (pol) X family is an ancient group of enzymes that function in DNA replication and repair (pol beta), translesion synthesis (pol lambda and pol micro) and terminal addition of non-templated nucleotides. This latter terminal deoxynucleotidyl transferase (TdT) activity performs the unique function of providing diversity at coding joins of immunoglobulin and T-cell receptor genes. The first isolated full-length TdT genes from shark and skate are reported here. Comparisons with the three-dimensional structure of mouse TdT indicate structural similarity with elasmobranch orthologues that supports both a template-independent mode of replication and a lack of strong nucleotide bias. The vertebrate TdTs appear more closely related to pol micro and fungal polymerases than to pol lambda and pol beta. Thus, unlike other molecules of adaptive immunity, TdT is a member of an ancient gene family with a clear gene phylogeny and a high degree of similarity, which implies the existence of TdT ancestors in jawless fishes and invertebrates.

Indexed as

Amino Acid SequenceAnimalsBiological EvolutionConserved SequenceDNA-Directed DNA PolymeraseDNA NucleotidylexotransferaseElasmobranchiiMiceMolecular Sequence DataPhylogenyProtein ConformationProtein FoldingSequence Homology, Amino AcidDNA-Directed DNA PolymeraseDNA Nucleotidylexotransferase

Identifiers

PMID14579105
OpenAlexW2025514504

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.