Evidence map›Paper›PMID 14567691›Full record

ArticleBiochemistry2003

An uncleavable procaspase-3 mutant has a lower catalytic efficiency but an active site similar to that of mature caspase-3.

Kakoli Bose, Cristina Pop, Brett Feeney, A Clay Clark

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Sequential unfolding mechanisms of monomeric caspases.bioRxiv : the preprint server for biology · 2023
    Article
  3. Article
  4. Evolution of the folding landscape of effector caspases.The Journal of biological chemistry · 2021
    Article
  5. Tracking exogenous intracellular casp-3 using split GFP.Protein science : a publication of the Protein Society · 2021
    Article
  6. Article
  7. Targeting apoptotic caspases in cancer.Biochimica et biophysica acta. Molecular cell research · 2020
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Allosteric Tuning of Caspase-7: A Fragment-Based Drug Discovery Approach.Angewandte Chemie (International ed. in English) · 2017
    Article
  15. Article
  16. Article
  17. Tunable allosteric library of caspase-3 identifies coupling between conserved water molecules and conformational selection.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kakoli BoseDepartment of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, North Carolina 27695-7622, USA.
Cristina Pop
Brett Feeney
A Clay Clark
North Carolina State University · US

Funding

Dimerization mechanisms of two procaspase subfamiliesR01GM065970 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI CLARK, ALLAN CLAY · 2003 to 2012
$2.4M
NIGMS NIH HHS GM065970NIGMS NIH HHS R01 GM065970
6 · The paper itself

Abstract

We have examined the enzymatic activity of an uncleavable procaspase-3 mutant (D9A/D28A/D175A), which contains the wild-type catalytic residues in the active site. The results are compared to those for the mature caspase-3. Although at pH 7.5 and 25 degrees C the K(m) values are similar, the catalytic efficiency (k(cat)) is approximately 130-fold lower in the zymogen. The mature caspase-3 demonstrates a maximum activity at pH 7.4, whereas the maximum activity of procaspase-3 occurs at pH 8.3. The pK(a) values of both catalytic groups, H121 and C163, are shifted to higher pH for procaspase-3. We developed limited proteolysis assays using trypsin and V8 proteases, and we show that these assays allow the examination of amino acids in three of five active site loops. In addition, we examined the fluorescence emission of the two tryptophanyl residues in the active site over the pH range of 2.5-9 as well as the response to several quenching agents. Overall, the data suggest that the major conformational change that occurs upon maturation results in formation of the loop bundle among loops L4, L2, and L2'. The pK(a) values of both catalytic groups decrease as a result of the loop movements. However, loop L3, which comprises the bulk of the substrate binding pocket, does not appear to be unraveled and solvent-exposed, even at lower pH.

Indexed as

Base SequenceBinding SitesCaspase 3CaspasesCatalysisDNA PrimersEnzyme ActivationEnzyme PrecursorsFluorescenceHydrolysisModels, MolecularProtein ConformationTrypsinCaspase 3CaspasesDNA PrimersEnzyme PrecursorsTrypsin

Identifiers

PMID14567691
PMCPMC3119717
OpenAlexW2058856913

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.