Evidence map›Paper›PMID 14563860›Full record

ArticleJournal of bacteriology2003

Sequence diversity of Treponema pallidum subsp. pallidum tprK in human syphilis lesions and rabbit-propagated isolates.

Rebecca E LaFond, Arturo Centurion-Lara, Charmie Godornes, Anne M Rompalo, Wesley C Van Voorhis, Sheila A Lukehart

Abstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
  2. Development and utilization ofbioRxiv : the preprint server for biology · 2024
    Article
  3. In-Depth Proteome Coverage of In Vitro-CulturedJournal of proteome research · 2024
    Article
  4. Article
  5. Article
  6. Longitudinal Variations in theMicrobiology spectrum · 2023
    Article
  7. Genetic Profiling of the Full-LengthMicrobiology spectrum · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rebecca E LaFondDepartments of Pathobiology, University of Washington, Seattle, WA 98104, USA.
Arturo Centurion-Lara
Charmie Godornes
Anne M Rompalo
Wesley C Van Voorhis
Sheila A Lukehart

Funding

VENEREAL DISEASET32AI007140 · NIAID · UNIVERSITY OF WASHINGTON · PI Julia Cook Dombrowski · 1985 to 2026
$19.4M
TREPONEMA PALLIDUM PATHOGENESIS ASSOCIATED MOLECULESR01AI042143 · NIAID · UNIVERSITY OF WASHINGTON · PI LUKEHART, SHEILA A. · 1998 to 2015
$5.4M
PROTECTIVE IMMUNITY AGAINST SYPHILISP01AI034616 · NIAID · UNIVERSITY OF WASHINGTON · PI LUKEHART, SHEILA A. · 1993 to 2003
$2.5M
SURFACE ANTIGENS OF TREPONEMA PALLIDUMR01AI043456 · NIAID · UNIVERSITY OF WASHINGTON · PI VAN VOORHIS, WESLEY C · 1999 to 2008
$2.4M
IMPACT OF SOCIAL NETWORKS ON SYPHILIS TRANSMISSIONR01AI045724 · NIAID · JOHNS HOPKINS UNIVERSITY · PI ROMPALO, ANNE M · 2000 to 2004
$2.3M
NIAID NIH HHS AI07140NIAID NIH HHS AI34616NIAID NIH HHS AI42143NIAID NIH HHS AI43456NIAID NIH HHS AI45724NIAID NIH HHS P01 AI034616NIAID NIH HHS R01 AI042143NIAID NIH HHS R01 AI043456NIAID NIH HHS R01 AI045724NIAID NIH HHS T32 AI007140
6 · The paper itself

Abstract

The tprK gene of Treponema pallidum subsp. pallidum, the causative agent of venereal syphilis, belongs to a 12-member gene family and encodes a protein with a predicted cleavable signal sequence and predicted transmembrane domains. Except for the Nichols type strain, all rabbit-propagated isolates of T. pallidum examined thus far are comprised of mixed populations of organisms with heterogeneous tprK sequences. We show that tprK sequences in treponemes obtained directly from syphilis patients are also heterogeneous. Clustering analysis demonstrates that primary chancre tprK sequences are more likely to cluster within a sample than among samples and that tighter clustering is seen within chancre samples than within rabbit-propagated isolates. Closer analysis of tprK sequences from a rabbit-propagated isolate reveals that individual variable regions have different levels of diversity, suggesting that variable regions may have different intrinsic rates of sequence change or may be under different levels of selection. Most variable regions show increased sequence diversity upon passage. We speculate that the diversification of tprK during infection allows organisms to evade the host immune response, contributing to reinfection and persistent infection.

Indexed as

Genes, BacterialAmino Acid SequenceAnimalsBacterial Outer Membrane ProteinsChancreCloning, MolecularCluster AnalysisGenetic VariationHumansMolecular Sequence DataRabbitsSequence AlignmentTreponema pallidumBacterial Outer Membrane ProteinsTpr protein, Treponema

Identifiers

PMID14563860
PMCPMC219401

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.