Evidence map›Paper›PMID 14560017›Full record

ArticleMolecular and cellular biology2003

Histone deacetylation of RB-responsive promoters: requisite for specific gene repression but dispensable for cell cycle inhibition.

Hasan Siddiqui, David A Solomon, Ranjaka W Gunawardena, Ying Wang, Erik S Knudsen

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 78 citations in OpenAlex.

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  19. p65 Negatively regulates transcription of the cyclin E gene.The Journal of biological chemistry · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Hasan SiddiquiDepartment of Cell Biology, Vontz Center for Molecular Studies, University of Cincinnati College of Medicine, Cincinnati, Ohio 45267-0521, USA.
David A Solomon
Ranjaka W Gunawardena
Ying Wang
Erik S Knudsen
University of Cincinnati Medical Center · US

Funding

RB TUMOR SUPPRESSOR--MECHANISMS OF PROLIFERATION CONTROLR01CA082525 · NCI · UNIVERSITY OF CINCINNATI · PI KNUDSEN, ERIK · 1999 to 2003
$1.2M
NCI NIH HHS CA82525NCI NIH HHS R01 CA082525
6 · The paper itself

Abstract

The retinoblastoma tumor suppressor protein (RB) is targeted for inactivation in the majority of human tumors, underscoring its critical role in attenuating cellular proliferation. RB inhibits proliferation by repressing the transcription of genes that are essential for cell cycle progression. To repress transcription, RB assembles multiprotein complexes containing chromatin-modifying enzymes, including histone deacetylases (HDACs). However, the extent to which HDACs participate in transcriptional repression and are required for RB-mediated repression has not been established. Here, we investigated the role of HDACs in RB-dependent cell cycle inhibition and transcriptional repression. We find that active RB mediates histone deacetylation on cyclin A, Cdc2, topoisomerase IIalpha, and thymidylate synthase promoters. We also demonstrate that this deacetylation is HDAC dependent, since the HDAC inhibitor trichostatin A (TSA) prevented histone deacetylation at each promoter. However, TSA treatment blocked RB repression of only a specific subset of genes, thereby demonstrating that the requirement of HDACs for RB-mediated transcriptional repression is promoter specific. The HDAC-independent repression was not associated with DNA methylation or gene silencing but was readily reversible. We show that this form of repression resulted in altered chromatin structure and was dependent on SWI/SNF chromatin remodeling activity. Importantly, we find that cell cycle inhibitory action of RB is not intrinsically dependent on the ability to recruit HDAC activity. Thus, while HDACs do play a major role in RB-mediated repression, they are dispensable for the repression of critical targets leading to cell cycle arrest.

Indexed as

Gene Expression RegulationPromoter Regions, GeneticAcetylationAnimalsCell CycleCell Cycle ProteinsCell LineDoxycyclineEnzyme InhibitorsHistone DeacetylasesHistonesHumansHydroxamic AcidsMultienzyme ComplexesRatsRepressor ProteinsCell Cycle ProteinsDoxycyclineEnzyme InhibitorsHistone DeacetylasesHistonesHydroxamic AcidsMultienzyme ComplexesRepressor ProteinsRetinoblastoma Proteintrichostatin A

Identifiers

PMID14560017
PMCPMC207566
OpenAlexW2102067723

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.