ArticlePlant molecular biology2003
Abundance of plastid DNA insertions in nuclear genomes of rice and Arabidopsis.
Article in Plant molecular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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31 citing papers in PubMed, 55 citations in OpenAlex.
- The complete mitochondrial genome and phylogenetic analysis ofFrontiers in plant science · 2025Article
- Extensive import of nucleus-encoded tRNAs into chloroplasts of the photosynthetic lycophyte,Proceedings of the National Academy of Sciences of the United States of America · 2024Article
- Pangenome-based trajectories of intracellular gene transfers in Poaceae unveil high cumulation in Triticeae.Plant physiology · 2023Article
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- Plastid Genomes of Flowering Plants: Essential Principles.Methods in molecular biology (Clifton, N.J.) · 2021Article
- Nuclear Integrants of Organellar DNA Contribute to Genome Structure and Evolution in Plants.International journal of molecular sciences · 2020Review
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- Jalal A. Aliyev (1928-2016): a great scientist, a great teacher and a great human being.Photosynthesis research · 2016Article
- Transcriptome Profiling Revealed Stress-Induced and Disease Resistance Genes Up-Regulated in PRSV Resistant Transgenic Papaya.Frontiers in plant science · 2016Article
- Screening and chromosome localization of two cotton BAC clones.Comparative cytogenetics · 2016Article
- Analyses of Old "Prokaryotic" Proteins Indicate Functional Diversification in Arabidopsis and Oryza sativa.Frontiers in plant science · 2016Article
- Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.Genome biology and evolution · 2015Article
- Plastid DNA insertions in plant nuclear genomes: the sites, abundance and ages, and a predicted promoter analysis.Functional & integrative genomics · 2015Review
- Exploring the limits for reduction of plastid genomes: a case study of the mycoheterotrophic orchids Epipogium aphyllum and Epipogium roseum.Genome biology and evolution · 2015Article
- Patterns of genomic integration of nuclear chloroplast DNA fragments in plant species.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014Article
- Article
- The complete chloroplast genome of banana (Musa acuminata, Zingiberales): insight into plastid monocotyledon evolution.PloS one · 2013Article
- Plastid DNA in the nucleus: new genes for old.Plant signaling & behavior · 2012Article
- Conservation of plastid sequences in the plant nuclear genome for millions of years facilitates endosymbiotic evolution.Plant physiology · 2011Article
Corrections and comments
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Authors and funding
4 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Pairwise comparison of whole plastid and draft nuclear genomic sequences of Arabidopsis thaliana and Oryza sativa L. ssp. indica shows that rice nuclear genomic sequences contain homologs of plastid DNA covering about 94 kb (83%) of plastid genome and including one or more full-length intact (without mutations resulting in premature stop codons) homologues of 26 known protein-coding (KPC) plastid genes. By contrast, only about 20 kb (16%) of chloroplast DNA, including a single intact plastid-derived KPC gene, is presented in the nucleus of A. thaliana. Sixteen rice plastid genes have at least one nuclear copy without any mutation or with only synonymous substitutions. Nuclear copies for other ten plastid genes contain both synonymous and non-synonymous substitutions. Multiple ESTs for 25 out of 26 KPC genes were also found, as well as putative promoters for some of them. The study of substitutions pattern shows that some of nuclear homologues of plastid genes may be functional and/or are under the pressure of the positive natural selection. The similar comparative analysis performed on rice chromosome 1 revealed 27 contigs containing plastid-derived sequences, totalling about 84 kb and covering two thirds of chloroplast DNA, with the intact nuclear copies of 26 different KPC genes. One of these contigs, AP003280, includes almost 57 kb (45%) of chloroplast genome with the intact copies of 22 KPC genes. At the same time, we observed that relative locations of homologues in plastid DNA and the nuclear genome are significantly different.
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