ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2004
Exploitation of colinear relationships between the genomes of Lotus japonicus, Pisum sativum and Arabidopsis thaliana, for positional cloning of a legume symbiosis gene.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Recent advancement in OMICS approaches to enhance abiotic stress tolerance in legumes.Frontiers in plant science · 2022Review
- Development of gene-based molecular markers tagging low alkaloid pauper locus in white lupin (Lupinus albus L.).Journal of applied genetics · 2019Article
- Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (Frontiers in plant science · 2018Article
- Naturally occurring diversity helps to reveal genes of adaptive importance in legumes.Frontiers in plant science · 2015Article
- Comparative genomics to bridge Vicia faba with model and closely-related legume species: stability of QTLs for flowering and yield-related traits.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Translational Genomics in Legumes Allowed Placing In Silico 5460 Unigenes on the Pea Functional Map and Identified Candidate Genes in Pisum sativum L.G3 (Bethesda, Md.) · 2011Article
- Functional genomics of soybean for improvement of productivity in adverse conditions.Functional & integrative genomics · 2010Review
- A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana.PLoS genetics · 2009Article
- Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris.BMC genomics · 2008Article
- Genome structure of the legume, Lotus japonicus.DNA research : an international journal for rapid publication of reports on genes and genomes · 2008Article
- Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome.Plant molecular biology · 2007Article
- Genome sequencing and genome resources in model legumes.Plant physiology · 2007Review
- Article
- Significant microsynteny with new evolutionary highlights is detected between Arabidopsis and legume model plants despite the lack of macrosynteny.Molecular genetics and genomics : MGG · 2005Article
- Bridging model and crop legumes through comparative genomics.Plant physiology · 2005Review
- Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.BMC biology · 2005Article
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Authors and funding
7 authors.
Funding
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Abstract
The Lotus japonicus LjSYM2 gene, and the Pisum sativum orthologue PsSYM19, are required for the formation of nitrogen-fixing root nodules and arbuscular mycorrhiza. Here we describe the map-based cloning procedure leading to the isolation of both genes. Marker information from a classical AFLP marker-screen in Lotus was integrated with a comparative genomics approach, utilizing Arabidopsis genome sequence information and the pea genetic map. A network of gene-based markers linked in all three species was identified, suggesting local colinearity in the region around LjSYM2/PsSYM19. The closest AFLP marker was located just over 200 kb from the LjSYM2 gene, the marker SHMT, which was converted from a marker on the pea map, was only 7.9 kb away. The LjSYM2/PsSYM19 region corresponds to two duplicated segments of the Arabidopsis chromosomes AtII and AtIV. Lotus homologues of Arabidopsis genes within these segments were mapped to three clusters on LjI, LjII and LjVI, suggesting that during evolution the genomic segment surrounding LjSYM2 has been subjected to duplication events. However, one marker, AUX-1, was identified based on colinearity between Lotus and Arabidopsis that mapped in physical proximity of the LjSym2 gene.
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