Evidence map›Paper›PMID 14557402›Full record

ArticleThe Journal of general physiology2003

The role of loop 5 in acetylcholine receptor channel gating.

Sudha Chakrapani, Timothy D Bailey, Anthony Auerbach

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Modulation of theeLife · 2020
    Article
  3. Article
  4. Article
  5. The energy and work of a ligand-gated ion channel.Journal of molecular biology · 2013
    Review
  6. Article
  7. Article
  8. Review
  9. Synaptic neurotransmitter-gated receptors.Cold Spring Harbor perspectives in biology · 2012
    Review
  10. Article
  11. Design and control of acetylcholine receptor conformational change.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Probing protein packing surrounding the residues in and flanking the nicotinic acetylcholine receptor M2M3 loop.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2009
    Article
  20. Unliganded gating of acetylcholine receptor channels.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sudha ChakrapaniCenter for Single-Molecule Biophysics and Department of Physiology and Biophysics, State University of New York at Buffalo, Buffalo, NY 14214, USA. auerbach@buffalo.edu
Timothy D Bailey
Anthony Auerbach
University at Buffalo, State University of New York · US

Funding

MULTIPLE ACTIVITY PATTERNS OF ACETYLCHOLINE RECEPTORSR37NS023513 · NINDS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI AUERBACH, ANTHONY L · 2000 to 2013
$6.9M
Multiple Activity Patterns of Acetylcholine ReceptorsR56NS023513 · NINDS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI AUERBACH, ANTHONY L · 2014 to 2014
$530k
MULTIPLE ACTIVITY PATTERNS OF ACETYLCHOLINE RECEPTORSR01NS023513 · NINDS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI AUERBACH, ANTHONY L · 1987 to 1999
–
NINDS NIH HHS NS-23513NINDS NIH HHS R01 NS023513NINDS NIH HHS R37 NS023513NINDS NIH HHS R56 NS023513
6 · The paper itself

Abstract

Nicotinic acetylcholine receptor channel (AChR) gating is an organized sequence of molecular motions that couples a change in the affinity for ligands at the two transmitter binding sites with a change in the ionic conductance of the pore. Loop 5 (L5) is a nine-residue segment (mouse alpha-subunit 92-100) that links the beta4 and beta5 strands of the extracellular domain and that (in the alpha-subunit) contains binding segment A. Based on the structure of the acetylcholine binding protein, we speculate that in AChRs L5 projects from the transmitter binding site toward the membrane along a subunit interface. We used single-channel kinetics to quantify the effects of mutations to alphaD97 and other L5 residues with respect to agonist binding (to both open and closed AChRs), channel gating (for both unliganded and fully-liganded AChRs), and desensitization. Most alphaD97 mutations increase gating (up to 168-fold) but have little or no effect on ligand binding or desensitization. Rate-equilibrium free energy relationship analysis indicates that alphaD97 moves early in the gating reaction, in synchrony with the movement of the transmitter binding site (Phi = 0.93, which implies an open-like character at the transition state). alphaD97 mutations in the two alpha-subunits have unequal energetic consequences for gating, but their contributions are independent. We conclude that the key, underlying functional consequence of alphaD97 perturbations is to increase the unliganded gating equilibrium constant. L5 emerges as an important and early link in the AChR gating reaction which, in the absence of agonist, serves to increase the relative stability of the closed conformation of the protein.

Indexed as

Amino Acid SequenceAnimalsCell LineHumansIon Channel GatingMiceMolecular Sequence DataMutationProtein Structure, TertiaryReceptors, CholinergicReceptors, Cholinergic

Identifiers

PMID14557402
PMCPMC2229574
OpenAlexW2130881414

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.