Evidence map›Paper›PMID 14555489›Full record

ArticleEukaryotic cell2003

Sfp1 plays a key role in yeast ribosome biogenesis.

Ian Fingerman, Vijayalakshmi Nagaraj, David Norris, Andrew K Vershon

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 126 citations in OpenAlex.

  1. Article
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  5. TheInternational journal of molecular sciences · 2024
    Article
  6. Article
  7. Article
  8. Advances inJournal of fungi (Basel, Switzerland) · 2023
    Review
  9. Article
  10. Article
  11. Special Issue: Yeast Cell Signaling Pathways (Volume 1).International journal of molecular sciences · 2023
    Article
  12. Article
  13. Review
  14. Review
  15. Yeast Crf1p: An activator in need is an activator indeed.Computational and structural biotechnology journal · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ian FingermanWaksman Institute and Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey 08854, USA.
Vijayalakshmi Nagaraj
David Norris
Andrew K Vershon
Rutgers, The State University of New Jersey · US

Funding

DOUBLE STRAND BREAKS AND HETERODUPLEX DNA IN YEASTR01GM057058 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI VERSHON, ANDREW · 1998 to 2001
$303k
NIGMS NIH HHS GM57058
6 · The paper itself

Abstract

Sfp1, an unusual zinc finger protein, was previously identified as a gene that, when overexpressed, imparted a nuclear localization defect. sfp1 cells have a reduced size and a slow growth phenotype. In this study we show that SFP1 plays a role in ribosome biogenesis. An sfp1 strain is hypersensitive to drugs that inhibit translational machinery. sfp1 strains also have defects in global translation as well as defects in rRNA processing and 60S ribosomal subunit export. Microarray analysis has previously shown that ectopically expressed SFP1 induces the transcription of a large subset of genes involved in ribosome biogenesis. Many of these induced genes contain conserved promoter elements (RRPE and PAC). Our results show that activation of transcription from a reporter construct containing two RRPE sites flanking a single PAC element is SFP1 dependent. However, we have been unable to detect direct binding of the protein to these elements. This suggests that regulation of genes containing RRPEs is dependent upon Sfp1 but that Sfp1 may not directly bind to these conserved promoter elements; rather, activation may occur through an indirect mechanism.

Indexed as

Active Transport, Cell NucleusCell DivisionCinnamatesCycloheximideDNA-Binding ProteinsGene Expression Regulation, FungalGene SilencingHygromycin BMutagenesis, Site-DirectedParomomycinPolyribosomesPromoter Regions, GeneticProtein BiosynthesisRibosomesRNA PrecursorsRNA, RibosomalCinnamatesCycloheximideDNA-Binding Proteinshygromycin AHygromycin BParomomycinRNA PrecursorsRNA, RibosomalSaccharomyces cerevisiae ProteinsSFP1 protein, S cerevisiae

Identifiers

PMID14555489
PMCPMC219361
OpenAlexW2162752401

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.