Evidence map›Paper›PMID 14555470›Full record

ArticleEukaryotic cell2003

Nucleosome position-dependent and -independent activation of HIS7 epression in Saccharomyces cerevisiae by different transcriptional activators.

Oliver Valerius, Cornelia Brendel, Claudia Wagner, Sven Krappmann, Fritz Thoma, Gerhard H Braus

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Oliver ValeriusInstitute of Microbiology and Genetics, Georg-August-University, D-37077 Göttingen, Germany.
Cornelia Brendel
Claudia Wagner
Sven Krappmann
Fritz Thoma
Gerhard H Braus
University of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ARO4 and HIS7 are two tandemly orientated genes of Saccharomyces cerevisiae that are transcribed into the same direction. The ARO4 terminator and the HIS7 promoter regions are sensitive to Micrococcus nuclease (Mnase) and separated by a positioned nucleosome. The HIS7 promoter is target for the transcription factors Gcn4p and Bas1p/Bas2p that activate its transcription upon amino acid starvation and purine limitation, respectively. Activation of the HIS7 gene by Gcn4p overexpression but not by Bas1p/Bas2p releases an ordered nucleosome distribution to yield increased Mnase sensitivity throughout the intergenic region. This remodeling is SNF2 dependent but mostly GCN5 independent. Accordingly, SNF2 is necessary for the Gcn4p-mediated transcriptional activation of the HIS7 gene. GCN5 is required for activation upon adenine limitation by Bas1p/Bas2p. Our data suggest that activation of HIS7 transcription by Gcn4p and Bas1p/Bas2p is supported by a nucleosome position-dependent and -independent mechanism, respectively. Whereas Gcn4p activation causes Swi/Snf-mediated remodeling of the nucleosomal architecture at the HIS7 promoter, the Bas1p/Bas2p complex presumably activates in combination with Gcn5p-dependent histone acetylation.

Indexed as

Nuclear Proteins3-Deoxy-7-Phosphoheptulonate SynthaseAdenineAdenosine TriphosphatasesAldehyde-LyasesAminohydrolasesBlotting, NorthernBlotting, SouthernChromatinDeoxyribonucleasesDNA-Binding ProteinsDNA, IntergenicGene Expression Regulation, FungalGenotypeHistone AcetyltransferasesHomeodomain Proteins3-Deoxy-7-Phosphoheptulonate SynthaseAdenineAdenosine TriphosphatasesAldehyde-LyasesAminohydrolasesBAS1 protein, S cerevisiaeChromatinDeoxyribonucleasesDNA-Binding ProteinsDNA, IntergenicGCN5 protein, S cerevisiaeHistone AcetyltransferasesHomeodomain Proteinsimidazole glycerol phosphate synthaseMultienzyme ComplexesNuclear ProteinsNucleosomesp300-CBP-Associated FactorPHO2 protein, S cerevisiaeProtein KinasesSaccharomyces cerevisiae ProteinsSNF2 protein, S cerevisiaeTrans-ActivatorsTranscription FactorsTransferases

Identifiers

PMID14555470
PMCPMC219350
OpenAlexW2137650678

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.