Evidence map›Paper›PMID 14535845›Full record

ArticleThe Biochemical journal2004

Molecular basis of the high-affinity activation of type 1 ryanodine receptors by imperatoxin A.

Chul Won Lee, Eun Hui Lee, Koh Takeuchi, Hideo Takahashi, Ichio Shimada, Kazuki Sato, Song Yub Shin, Do Han Kim, Jae Il Kim

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
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  6. Article
  7. Review
  8. Article
  9. Scorpion venom components that affect ion-channels function.Toxicon : official journal of the International Society on Toxinology · 2013
    Review
  10. Article
  11. Unique scorpion toxin with a putative ancestral fold provides insight into evolution of the inhibitor cystine knot motif.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  12. Article
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Chul Won LeeDepartment of Life Science, Kwangju Institute of Science and Technology, Kwangju 500-712, South Korea.
Eun Hui Lee
Koh Takeuchi
Hideo Takahashi
Ichio Shimada
Kazuki Sato
Song Yub Shin
Do Han Kim
Jae Il Kim
Gwangju Institute of Science and Technology · KRThe University of Tokyo · JPChosun University · KRFukuoka Women's University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Both imperatoxin A (IpTx(a)), a 33-residue peptide toxin from scorpion venom, and peptide A, derived from the II-III loop of dihydropyridine receptor (DHPR), interact specifically with the skeletal ryanodine receptor (RyR1), which is a Ca(2+)-release channel in the sarcoplasmic reticulum, but with considerably different affinities. IpTx(a) activates RyR1 with nanomolar affinity, whereas peptide A activates RyR1 at micromolar concentrations. To investigate the molecular basis for high-affinity activation of RyR1 by IpTx(a), we have determined the NMR solution structure of IpTx(a), and identified its functional surface by using alanine-scanning analogues. A detailed comparison of the functional surface profiles for two peptide activators revealed that IpTx(a) exhibits a large functional surface area (approx. 1900 A(2), where 1 A=0.1 nm), based on a short double-stranded antiparallel beta-sheet structure, while peptide A bears a much smaller functional surface area (approx. 800 A(2)), with the five consecutive basic residues (Arg(681), Lys(682), Arg(683), Arg(684) and Lys(685)) being clustered at the C-terminal end of the alpha-helix. The functional surface of IpTx(a) is composed of six essential residues (Leu(7), Lys(22), Arg(23), Arg(24), Arg(31) and Arg(33)) and several other important residues (His(6), Lys(8), Arg(9), Lys(11), Lys(19), Lys(20), Gly(25), Thr(26), Asn(27) and Lys(30)), indicating that amino acid residues involved in RyR1 activation make up over the half of the toxin molecule with the exception of cysteine residues. Taken together, these results suggest that the site where peptide A binds to RyR1 belongs to a subset of macrosites capable of being occupied by IpTx(a), resulting in differing the affinity and the mode of activation.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCalcium Channel BlockersCalcium Channels, L-TypeModels, MolecularMolecular ConformationMolecular Sequence DataNuclear Magnetic Resonance, Biomolecularomega-ConotoxinsPeptide FragmentsRabbitsRyanodine Receptor Calcium Release ChannelScorpion VenomsSequence AlignmentStructure-Activity RelationshipCalcium Channel BlockersCalcium Channels, L-Typedihydropyridine receptor (671-690)imperatoxin Amaurocalcineomega-conotoxin-MVIIComega-ConotoxinsPeptide FragmentsRyanodine Receptor Calcium Release ChannelScorpion Venoms

Identifiers

PMID14535845
PMCPMC1223873
OpenAlexW2026537960

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.