Evidence map›Paper›PMID 14532183›Full record

ArticleJournal of clinical microbiology2003

Rapid diagnosis of mycobacterial infections and quantitation of Mycobacterium tuberculosis load by two real-time calibrated PCR assays.

Francesco Broccolo, Paolo Scarpellini, Giuseppe Locatelli, Anna Zingale, Anna M Brambilla, Paola Cichero, Leonardo A Sechi, Adriano Lazzarin, Paolo Lusso, Mauro S Malnati

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Revisiting the methods for detectingAccess microbiology · 2021
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  7. Review
  8. Optimized Lysis-Extraction Method Combined WithFrontiers in microbiology · 2018
    Article
  9. Use of Digital Droplet PCR to DetectFrontiers in cellular and infection microbiology · 2017
    Article
  10. Article
  11. Article
  12. Molecular diagnosis of central nervous system opportunistic infections in HIV-infected Zambian adults.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2014
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. The role of TLR4 activation in photoreceptor mitochondrial oxidative stress.Investigative ophthalmology & visual science · 2011
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Francesco BroccoloUnit of Human Virology, San Raffaele Scientific Institute, Milan, Italy.
Paolo Scarpellini
Giuseppe Locatelli
Anna Zingale
Anna M Brambilla
Paola Cichero
Leonardo A Sechi
Adriano Lazzarin
Paolo Lusso
Mauro S Malnati
Institute of Human Virology · NGOffice of Infectious Diseases · USSan Raffaele University of Rome · ITUniversity of Sassari · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sensitive and specific techniques to detect and identify Mycobacterium tuberculosis directly in clinical specimens are important for the diagnosis and management of patients with tuberculosis (TB). We developed two real-time PCR assays, based on the IS6110 multicopy element and on the senX3-regX3 intergenic region, which provide a rapid method for the diagnosis of mycobacterial infections. The sensitivity and specificity of both assays were established by using purified DNA from 71 clinical isolates and 121 clinical samples collected from 83 patients, 20 of whom were affected by TB. Both assays are accurate, sensitive, and specific, showing a complementary pattern of Mycobacterium recognition: broader for the IS6110-based assay and restricted to the M. tuberculosis complex for the senX3-regX3-based assay. Moreover, the addition of a synthetic DNA calibrator prior to DNA extraction allowed us to measure the efficiency of DNA recovery and to control for the presence of PCR inhibitors. The mycobacterial burden of the clinical samples, as assessed by direct microscopy, correlates with the M. tuberculosis DNA load measured by the senX3-regX3-based assay. In addition, reduced levels of M. tuberculosis DNA load are present in those patients subjected to successful therapy, suggesting a potential use of this assay for monitoring treatment efficacy. Therefore, these assays represent a fully controlled high-throughput system for the evaluation of mycobacterial burden in clinical specimens.

Indexed as

Base SequenceDNA, BacterialDNA, IntergenicDNA Transposable ElementsHumansMolecular Sequence DataMycobacteriumMycobacterium InfectionsMycobacterium tuberculosisPolymerase Chain ReactionReproducibility of ResultsSensitivity and SpecificityTime FactorsTuberculosisDNA, BacterialDNA, IntergenicDNA Transposable Elements

Identifiers

PMID14532183
PMCPMC254334
OpenAlexW2140743262

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.