Evidence map›Paper›PMID 14532083›Full record

ArticleApplied and environmental microbiology2003

Nuclease activity of Saccharomyces cerevisiae Mre11 functions in targeted nucleotide alteration.

Li Liu, Michael Usher, Yiling Hu, Eric B Kmiec

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Increased efficiency of oligonucleotide-mediated gene repair through slowing replication fork progression.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  5. Article
  6. Targeted gene repair -- in the arena.The Journal of clinical investigation · 2003
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Li LiuDepartment of Biological Sciences, Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711, USA.
Michael Usher
Yiling Hu
Eric B Kmiec
Biotechnology Institute · USUniversity of Delaware · US

Funding

MECHANISM OF GENE CORRECTION BY RNA/DNA OLIGONUCLEOTIDESR01DK056134 · NIDDK · UNIVERSITY OF DELAWARE · PI KMIEC, ERIC B · 2000 to 2002
$695k
NIDDK NIH HHS 1R01 DK56134NIDDK NIH HHS R01 DK056134
6 · The paper itself

Abstract

Oligonucleotides can be used to direct site-specific changes in genomic DNA through a process in which mismatched base pairs in the oligonucleotide and the target DNA are created. The mechanism by which these complexes are developed and resolved is being studied by using Saccharomyces cerevisiae as a model system. Genetic analyses have revealed that in all likelihood the reaction occurs in two phases: DNA pairing and DNA repair. While the former phase involves strand assimilation, the latter phase likely involves an endonucleolytic processing step that leads to joint resolution. In this study, we established the importance of a functioning MRE11 gene in the overall reaction, as yeast strains deficient in MRE11 exhibited severely reduced activity. The activity could be rescued by complementation with wild-type MRE11 genes but not with MRE11 alleles lacking the nuclease function. Taken together, the data suggest that Mre11 provides nuclease activity for targeted nucleotide exchange, a process that could be used to reengineer yeast genes.

Indexed as

DNA RepairMutationBase SequenceDeoxyribonucleasesDNA, FungalEndodeoxyribonucleasesExodeoxyribonucleasesMolecular Sequence DataNucleotidesPlasmidsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDeoxyribonucleasesDNA, FungalEndodeoxyribonucleasesExodeoxyribonucleasesMRE11 protein, S cerevisiaeNucleotidesSaccharomyces cerevisiae Proteins

Identifiers

PMID14532083
PMCPMC201246
OpenAlexW2104506245

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.