Evidence map›Paper›PMID 14530433›Full record

ArticleNucleic acids research2003

Modification of the ionizing radiation response in living cells by an scFv against the DNA-dependent protein kinase.

Shuyi Li, Yoshihiko Takeda, Stéphanie Wragg, John Barrett, Andrew Phillips, William S Dynan

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
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  8. Article
  9. Article
  10. Article
  11. Modifying the function of DNA repair nanomachines for therapeutic benefit.Nanomedicine : nanotechnology, biology, and medicine · 2006
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Shuyi LiInstitute of Molecular Medicine and Genetics, Medical College of Georgia, Augusta, GA 30912, USA.
Yoshihiko Takeda
Stéphanie Wragg
John Barrett
Andrew Phillips
William S Dynan
Augusta University · US

Funding

MOLECULAR MECHANISM OF TRANSCRIPTIONAL ACTIVATIONR01GM035866 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI DYNAN, WILLIAM S · 1986 to 2004
$1.1M
NIGMS NIH HHS GM 35866NIGMS NIH HHS R01 GM035866
6 · The paper itself

Abstract

The non-homologous end joining pathway uses pre-existing proteins to repair DNA double-strand breaks induced by ionizing radiation. Here we describe manipulation of this pathway in living cells using a newly developed tool. We generated a single chain antibody variable fragment (scFv) that binds to the DNA-dependent protein kinase catalytic subunit (DNA-PKcs), a key enzyme in the pathway. In contrast to existing pharmacologic inhibitors, the scFv binds a newly defined regulatory site outside the kinase catalytic domain. Although the scFv inhibits kinase activity only modestly, it completely blocks DNA end joining in a cell-free system. Microinjection of the scFv sensitizes human cells to radiation, as measured by a reduction in efficiency of colony formation and induction of apoptosis at an otherwise sublethal dose of 1.5 Gy. The scFv blocks non-homologous end joining in situ at a step subsequent to histone gamma-H2AX focus formation but preceding gamma-H2AX dephosphorylation. Blockage occurs in cells exposed to as little as 0.1 Gy, indicating that DNA-PKcs is essential for double-strand break repair even at low radiation doses. The ability to modify the radiation response in situ in living cells provides a link between biochemical, genetic and cytologic approaches to the study of double-strand break repair intermediates.

Indexed as

DNA-Binding ProteinsApoptosisBinding Sites, AntibodyCatalytic DomainCell DivisionCell-Free SystemCell Line, TransformedCell Line, TumorDNADNA-Activated Protein KinaseDNA DamageDNA RepairHeLa CellsHumansImmunoglobulin FragmentsNuclear ProteinsDNADNA-Activated Protein KinaseDNA-Binding ProteinsImmunoglobulin Fragmentsimmunoglobulin FvNuclear ProteinsPRKDC protein, humanProtein Serine-Threonine Kinases

Identifiers

PMID14530433
PMCPMC219464
OpenAlexW2139392146

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.