Evidence map›Paper›PMID 14528003›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Single-cell analysis of covalently closed circular DNA copy numbers in a hepadnavirus-infected liver.

Yong-Yuan Zhang, Bai-Hua Zhang, Daniel Theele, Samuel Litwin, Eugene Toll, Jesse Summers

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 136 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Wnt/β-Catenin Signaling Regulates Hepatitis B Virus cccDNA Levels.International journal of molecular sciences · 2025
    Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
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  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. JHEP reports : innovation in hepatology · 2021
    Article
  17. Review
  18. Review
  19. Article
  20. Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yong-Yuan ZhangDepartment of Molecular Genetics and Microbiology, University of New Mexico, 915 Camino de Salud Northeast, Albuquerque, NM 87131, USA.
Bai-Hua Zhang
Daniel Theele
Samuel Litwin
Eugene Toll
Jesse Summers
University of New Mexico · USFox Chase Cancer Center · US

Funding

GENERATION/EMERGENCE OF VARIANT IN HEPADNAVIRUS INFECTONR01CA084017 · NCI · UNIVERSITY OF NEW MEXICO · PI SUMMERS, JESSE · 2000 to 2004
$3.3M
NCI NIH HHS CA 84017NCI NIH HHS R01 CA084017
6 · The paper itself

Abstract

Hepatitis B virus (hepadnavirus) infections are maintained by the presence of a small and regulated number of episomal viral genomes [covalently closed circular DNA (cccDNA)] in the nuclei of infected cells. Although a number of studies have measured the mean copy number of cccDNA molecules in hepadnaviral-infected cells, the distribution of individual copy numbers have not been reported. Using a PCR-based assay, we examined the number of cccDNA molecules of the duck hepatitis B virus in single nuclei isolated from the liver of a chronically infected duck over the course of 131 days of infection. Nuclei were isolated from frozen serial biopsies and individually deposited into PCR microplates by flow sorting. Each nucleus was assayed by nested PCR for cccDNA and for cellular IFN-alpha genes as an internal control. We found that 90% of the nuclei assayed contained between 1 and 17 cccDNA molecules, with the remaining 10% containing more (90% confidence), and that differences in the mean number of copies and distribution of copy numbers occurred within the same animal at different times postinfection. Overall, the data suggest (i) that the number of cccDNA molecules per cell may fluctuate over time, and (ii) that, according to these fluctuations, a substantial fraction of cells may contain only one or a few copies. We infer from the results that infected hepatocytes express virus at different levels and that during cell division it is possible to segregate cells containing no cccDNA.

Indexed as

AnimalsBase SequenceCell NucleusDNA, CircularDNA, ViralDucksFemaleGene DosageHepadnaviridae InfectionsHepatitis B Virus, DuckHepatitis, Viral, AnimalInterferon-alphaLiverPolymerase Chain ReactionDNA, CircularDNA, ViralInterferon-alpha

Identifiers

PMID14528003
PMCPMC218765
OpenAlexW1987051472

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.