Evidence map›Paper›PMID 14523243›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

The near attack conformation approach to the study of the chorismate to prephenate reaction.

Sun Hur, Thomas C Bruice

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

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  10. Correlating enzymatic reactivity for different substrates using transferable data-driven collective variables.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  17. Mutexa: A Computational Ecosystem for Intelligent Protein Engineering.Journal of chemical theory and computation · 2023
    Review
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  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors.

Sun HurDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106, USA.
Thomas C Bruice

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Standard free energies (DeltaGN degree) for formation of near attack conformers, those ground state conformers that can convert directly to the transition state, were calculated for the Claisen rearrangement of chorismate to prephenate in six different environments: water, wild-type enzymes from Bacillus subtilis and Escherichia coli, their Arg90Cit and Glu52Ala mutants, and the 1F7 catalytic antibody. Values of the calculated DeltaGN degrees and the experimentally determined activation energies (DeltaG++) are linearly related with the slope of approximately equal to 1. This demonstrates that the relative rate of the chorismate --> prephenate reaction is overwhelmingly dependent on the efficiency of formation of near attack conformers in the ground state.

Indexed as

AnimalsAntibodies, CatalyticBacillus subtilisCatalysisCatalytic DomainChorismate MutaseChorismic AcidCyclohexanecarboxylic AcidsCyclohexenesEnzyme ActivationEscherichia coliHydrophobic and Hydrophilic InteractionsIn Vitro TechniquesModels, MolecularMolecular ConformationMutagenesis, Site-DirectedAntibodies, CatalyticChorismate MutaseChorismic AcidCyclohexanecarboxylic AcidsCyclohexenesprephenic acidWater

Identifiers

PMID14523243
PMCPMC218705

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.