Evidence map›Paper›PMID 14517700›Full record

ArticleImmunogenetics2003

The -1030/-862-linked TNF promoter single-nucleotide polymorphisms are associated with the inability to control HIV-1 viremia.

Julio C Delgado, Jessica Y Leung, Andres Baena, Olga P Clavijo, Eric Vittinghoff, Susan Buchbinder, Steven Wolinsky, Marilynn Addo, Bruce D Walker, Edmond J Yunis and 1 more

Abstract read
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In one paragraph

Article in Immunogenetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Observational
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Julio C DelgadoCenter for Blood Research, Boston, MA 02115, USA.
Jessica Y Leung
Andres Baena
Olga P Clavijo
Eric Vittinghoff
Susan Buchbinder
Steven Wolinsky
Marilynn Addo
Bruce D Walker
Edmond J Yunis
Anne E Goldfeld
Dana-Farber/Boston Children's Cancer and Blood Disorders Center · USBoston University · USUniversity of California, San Francisco · USBrigham and Women's Hospital · USDana-Farber Cancer Institute · USNorthwestern University · US

Funding

GENETIC FACTORS AND SUSCEPTIBILITY TO TUBERCULOSISR01HL059838 · NHLBI · IMMUNE DISEASE INSTITUTE, INC. · PI GOLDFELD, ANNE · 1997 to 2006
$3.8M
HIV-1-SPECIFIC T CELL CLONESR01AI028568 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI WALKER, BRUCE D · 1989 to 2008
$1.9M
HIV-1 SPECIFIC T CELL CLONESR37AI028568 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI WALKER, BRUCE D · 1994 to 2003
$1.6M
Genetic/Immunological Basis of Tuberculosis and AnergyK08HL067471 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI DELGADO, JULIO CESAR · 2001 to 2005
$652k
NHLBI NIH HHS HL-59838NHLBI NIH HHS HL-67471NIAID NIH HHS AI-28568
6 · The paper itself

Abstract

Control of HIV-1 viremia and progression to AIDS has been associated with specific HLA genes. The tumor necrosis factor ( TNF) and the non-classical major histocompatibility (MHC) class I chain-related A ( MICA) genes are located in the genomic segment between the HLA class I and II genes and variants of both genes have been identified. We thus analyzed TNF promoter and MICA variants in a well-characterized group of HIV-1 infected individuals with different abilities to control HIV-1 viremia. In our cohort, the -1030/-862-linked TNF promoter single-nucleotide polymorphisms (SNPs), but not MICA variants, are significantly associated with lack of control of HIV-1 viremia ( P=0.03). This association is independent of those HLA-B35 alleles associated with HIV-1 disease progression with which the -862 TNF SNP has previously been independently associated. Thus, non-randomly associated genes near the TNF locus are likely involved in control of HIV-1 viremia.

Indexed as

Promoter Regions, GeneticHistocompatibility Antigens Class IHIV-1HIV InfectionsHost-Parasite InteractionsHumansPolymorphism, Single NucleotideTumor Necrosis Factor-alphaHistocompatibility Antigens Class IMHC class I-related chain ATumor Necrosis Factor-alpha

Identifiers

PMID14517700
OpenAlexW2035202961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.