Evidence map›Paper›PMID 14517553›Full record

ArticleNature genetics2003

A natural allele of Nxf1 suppresses retrovirus insertional mutations.

Jennifer A Floyd, David A Gold, Dorothy Concepcion, Tiffany H Poon, Xiaobo Wang, Elizabeth Keithley, Dan Chen, Erica J Ward, Steven B Chinn, Rick A Friedman and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
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  12. A missense mutation in Fgfr1 causes ear and skull defects in hush puppy mice.Mammalian genome : official journal of the International Mammalian Genome Society · 2011
    Article
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  15. Article
  16. Mapping of genetic modifiers of Eya1 ( bor/bor ) in CAST/EiJ and BALB/cJ that suppress cochlear aplasia and associated deafness.Mammalian genome : official journal of the International Mammalian Genome Society · 2008
    Article
  17. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Jennifer A FloydBiomedical Sciences Graduate Program, UCSD School of Medicine, 9500 Gilman Drive, La Jolla, California 92093-0644, USA.
David A Gold
Dorothy Concepcion
Tiffany H Poon
Xiaobo Wang
Elizabeth Keithley
Dan Chen
Erica J Ward
Steven B Chinn
Rick A Friedman
Hon-Tsen Yu
Kazuo Moriwaki
Toshihiko Shiroishi
Bruce A Hamilton
University of California, San Diego · USUniversity of Michigan–Ann Arbor · USHouse Clinic · USNational Institute of Genetics · JPNational Taiwan University · TWRIKEN BioResource Research Center · JP

Funding

Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
GENETIC DISSECTION OF A NEURODEGENERATION PATHWAYR01MH059207 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1999 to 2008
$3.1M
Genetic Modifier Activity and Network Properties of Nxf1R01GM086912 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 2010 to 2020
$2.9M
Study of a genetic network involved in ear developmentR01DC004796 · NIDCD · HOUSE EAR INSTITUTE · PI FRIEDMAN, RICK A. · 2001 to 2005
$1.9M
NIDCD NIH HHS R01 DC004796NIGMS NIH HHS R01 GM086912NIGMS NIH HHS T32 GM008666NIMH NIH HHS R01 MH059207
6 · The paper itself

Abstract

Endogenous retroviruses have shaped the evolution of mammalian genomes. Host genes that control the effects of retrovirus insertions are therefore of great interest. The modifier-of-vibrator-1 locus (Mvb1) controls levels of correctly processed mRNA from genes mutated by endogenous retrovirus insertions into introns, including the Pitpn(vb) tremor mutation and the Eya1(BOR) model of human branchiootorenal syndrome. Positional complementation cloning identifies Mvb1 as the nuclear export factor Nxf1, providing an unexpected link between the mRNA export receptor and pre-mRNA processing. Population structure of the suppressive allele in wild Mus musculus castaneus suggests selective advantage. A congenic Mvb1(CAST) allele is a useful tool for modifying gene expression from existing mutations and could be used to manipulate engineered mutations containing retroviral elements.

Indexed as

AllelesAmino Acid SequenceAnimalsDNA-Binding ProteinsEndogenous RetrovirusesGenetic Complementation TestHumansIntronsMiceMice, Mutant StrainsMolecular Sequence DataMutagenesis, InsertionalRepressor ProteinsSequence Homology, Amino AcidTranscription FactorsTransgenesDNA-Binding ProteinsNfx1 protein, mouseRepressor ProteinsTranscription Factors

Identifiers

PMID14517553
PMCPMC2756099
OpenAlexW2001862736

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.