Evidence map›Paper›PMID 14514886›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Genome-scale functional profiling of the mammalian AP-1 signaling pathway.

Sumit K Chanda, Suhaila White, Anthony P Orth, Richard Reisdorph, Loren Miraglia, Russell S Thomas, Paul DeJesus, Daniel E Mason, Qihong Huang, Raquel Vega and 16 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 110 citations in OpenAlex.

  1. Synthesis at the Interface of Chemistry and Biology.Accounts of chemical research · 2024
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  11. Review
  12. A systems approach and skeletal myogenesis.Comparative and functional genomics · 2012
    Article
  13. Article
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  15. A human MAP kinase interactome.Nature methods · 2010
    Article
  16. Identification of RING finger protein 4 (RNF4) as a modulator of DNA demethylation through a functional genomics screen.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  17. Article
  18. Article
  19. Article
  20. Toxicity testing in the 21st century: a vision and a strategy.Journal of toxicology and environmental health. Part B, Critical reviews · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 2 institutions in 1 country.

Sumit K ChandaGenomics Institute, Novartis Research Foundation, 10675 John Jay Hopkins Drive, San Diego, CA 92121, USA. chanda@gnf.org
Suhaila White
Anthony P Orth
Richard Reisdorph
Loren Miraglia
Russell S Thomas
Paul DeJesus
Daniel E Mason
Qihong Huang
Raquel Vega
De-Hua Yu
Christian G Nelson
Brendan M Smith
Robert Terry
Alicia S Linford
Yang Yu
Gung-wei Chirn
Chuanzheng Song
Mark A Labow
Dalia Cohen
Frederick J King
Eric C Peters
Peter G Schultz
Peter K Vogt
John B Hogenesch
Jeremy S Caldwell
Genomics Institute of the Novartis Research Foundation · USScripps Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Large-scale functional genomics approaches are fundamental to the characterization of mammalian transcriptomes annotated by genome sequencing projects. Although current high-throughput strategies systematically survey either transcriptional or biochemical networks, analogous genome-scale investigations that analyze gene function in mammalian cells have yet to be fully realized. Through transient overexpression analysis, we describe the parallel interrogation of approximately 20,000 sequence annotated genes in cancer-related signaling pathways. For experimental validation of these genome data, we apply an integrative strategy to characterize previously unreported effectors of activator protein-1 (AP-1) mediated growth and mitogenic response pathways. These studies identify the ADP-ribosylation factor GTPase-activating protein Centaurin alpha1 and a Tudor domain-containing hypothetical protein as putative AP-1 regulatory oncogenes. These results provide insight into the composition of the AP-1 signaling machinery and validate this approach as a tractable platform for genome-wide functional analysis.

Indexed as

Signal TransductionAnimalsCell LineCells, CulturedChickensDNA, ComplementaryGene Expression ProfilingGenome, HumanGenomicsHumansOligonucleotide Array Sequence AnalysisTranscription Factor AP-1TransfectionDNA, ComplementaryTranscription Factor AP-1

Identifiers

PMID14514886
PMCPMC218728
OpenAlexW2091223358

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.