Evidence map›Paper›PMID 14512731›Full record

ArticleJournal of biomolecular NMR2003

Measurement of residual dipolar couplings from 1Halpha to 13Calpha and 15N using a simple HNCA-based experiment.

Perttu Permi

Abstract read
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Article in Journal of biomolecular NMR, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Perttu PermiNMR Laboratory, Structural Biology and Biophysics Programme, Institute of Biotechnology, P.O. Box 65, University of Helsinki, FIN-00014, Helsinki, Finland. Perttu.Permi@helsinki.fi

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Novel NMR pulse schemes for simultaneous measurement of 1D(C)alpha(H)alpha and 2D(NH)alpha residual dipolar couplings in proteins is presented. We show that 2D(NH)alpha coupling can be very useful for protein structure determination. The 2D(NH)alpha coupling can be measured from 15N dimension with good accuracy on a slowly relaxing TROSY resonance, utilizing HNCA-TROSY-based experiments, which concomitantly supply large 1D(C)alpha(H)alpha coupling. The dynamic range of 2D(NH)alpha coupling is comparable to 1D(NC') coupling, but instead, it also serves non-redundant information on the course of protein backbone, thanks to rotational degree of freedom with respect to peptide bond. The HNCA-TROSY-based experiments are optimal for measuring residual dipolar couplings at high magnetic fields owing to absence of rapid transverse relaxation of carbonyl carbon. The reliability of the proposed approach was tested on 15N/13C human ubiquitin. A very good correlation with ubiquitin solution as well as crystal structure, for both 1D(C)alpha(H)alpha and 2D(NH)alpha couplings, was obtained.

Indexed as

Carbon IsotopesCrystallizationHumansHydrogenMagneticsModels, TheoreticalNitrogen IsotopesNuclear Magnetic Resonance, BiomolecularProteinsSolutionsUbiquitinCarbon IsotopesHydrogenNitrogen IsotopesProteinsSolutionsUbiquitin

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.