Evidence map›Paper›PMID 14504385›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Functional characterization of a portion of the Moloney murine leukemia virus gag gene by genetic footprinting.

Marcy R Auerbach, Chang Shu, Artem Kaplan, Ila R Singh

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Murine leukemia virus p12 functions include hitchhiking into the nucleus.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Protein transduction from retroviral Gag precursors.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Marcy R AuerbachDepartment of Pathology, Columbia University College of Physicians and Surgeons, 630 West 168th Street, New York, NY 10032, USA.
Chang Shu
Artem Kaplan
Ila R Singh
Columbia University · US

Funding

The role of XMRV, a newly discovered human retrovirus, in cancer pathogenesisR01CA149719 · NCI · UNIVERSITY OF UTAH · PI SINGH, ILA R · 2010 to 2014
$1.5M
HIGH RESOLUTION FUNCTIONAL MAPPING OF RETROVIRAL GENESK08AI001678 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SINGH, ILA R · 1999 to 2001
$247k
NCI NIH HHS R01 CA149719NIAID NIH HHS K08-AI01678
6 · The paper itself

Abstract

Retroviral Gag proteins perform important functions in viral assembly, but are also involved in other steps in the viral life cycle. Conventional mutational analysis has yielded considerable information about domains essential for these functions, yet many regions of gag remain uncharacterized. We used genetic footprinting, a technique that permits the generation and simultaneous analysis of large numbers of mutations, to perform a near-saturation mutagenesis and functional analysis of 639 nucleotides in the gag region of Moloney murine leukemia virus. We report here the resulting functional map defined by eight footprints representing regions of Moloney murine leukemia virus gag, some previously uncharacterized, that are essential for replication. We found that significant portions of matrix and p12 proteins were tolerant of insertions, in contrast to the N-terminal half of capsid, which was not. We analyzed 30 mutants from our library by using conventional methods to validate the footprints. Six of these mutants were characterized in detail, identifying the precise stage at which their replication is blocked. In addition to providing the most comprehensive functional map of a retroviral gag gene, our study demonstrates the abundance of information that can be gleaned by genetic footprinting of viral sequences.

Indexed as

DNA FingerprintingGenes, gagAmino Acid SequenceAnimalsBase SequenceCell LineDNADNA, ViralHumansMoloney murine leukemia virusMutagenesis, InsertionalRatsVirus ReplicationDNADNA, Viral

Identifiers

PMID14504385
PMCPMC208817
OpenAlexW1971057194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.