ArticleGenetics2003
A high-density genetic recombination map of sequence-tagged sites for sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses.
Article in Genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.
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Who cites it
77 citing papers in PubMed.
- Recent advancements in the breeding of sorghum crop: current status and future strategies for marker-assisted breeding.Frontiers in genetics · 2023Review
- Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum.G3 (Bethesda, Md.) · 2021Article
- Genetic Analysis of Stem Diameter and Water Contents To Improve Sorghum Bioenergy Efficiency.G3 (Bethesda, Md.) · 2020Article
- From molecules to populations: appreciating and estimating recombination rate variation.Nature reviews. Genetics · 2020Review
- Review
- Transmission Genetics of aFrontiers in plant science · 2020Article
- Article
- Interspecific genetic maps in Miscanthus floridulus and M. sacchariflorus accelerate detection of QTLs associated with plant height and inflorescence.Molecular genetics and genomics : MGG · 2019Article
- Genotyping by Sequencing of 393G3 (Bethesda, Md.) · 2018Article
- Simple Sequence Repeat (SSR) Genetic Linkage Map of D Genome Diploid Cotton Derived from an Interspecific Cross between Gossypium davidsonii and Gossypium klotzschianum.International journal of molecular sciences · 2018Article
- A Salt Overly Sensitive Pathway Member fromCurrent genomics · 2018Review
- Molecular mapping and candidate gene analysis of a new epicuticular wax locus in sorghum (Sorghum bicolor L. Moench).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Construction of high-resolution recombination maps in Asian seabass.BMC genomics · 2017Article
- Sweet sorghum as biofuel feedstock: recent advances and available resources.Biotechnology for biofuels · 2017Review
- The Evolution of Photoperiod-Insensitive Flowering in Sorghum, A Genomic Model for Panicoid Grasses.Molecular biology and evolution · 2016Article
- A Genome-Wide Analysis Reveals Stress and Hormone Responsive Patterns of TIFY Family Genes in Brassica rapa.Frontiers in plant science · 2016Article
- Fine mapping of qGW1, a major QTL for grain weight in sorghum.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- Genetic analysis of inflorescence and plant height components in sorghum (Panicoidae) and comparative genetics with rice (Oryzoidae).BMC plant biology · 2015Article
- PAV markers in Sorghum bicolour: genome pattern, affected genes and pathways, and genetic linkage map construction.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- Genetic analysis of vegetative branching in sorghum.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
17 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
24 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We report a genetic recombination map for Sorghum of 2512 loci spaced at average 0.4 cM ( approximately 300 kb) intervals based on 2050 RFLP probes, including 865 heterologous probes that foster comparative genomics of Saccharum (sugarcane), Zea (maize), Oryza (rice), Pennisetum (millet, buffelgrass), the Triticeae (wheat, barley, oat, rye), and Arabidopsis. Mapped loci identify 61.5% of the recombination events in this progeny set and reveal strong positive crossover interference acting across intervals of </=50 cM. Significant variations in DNA marker density are related to possible centromeric regions and to probable chromosome structural rearrangements between Sorghum bicolor and S. propinquum, but not to variation in levels of intraspecific allelic richness. While cDNA and genomic clones are similarly distributed across the genome, SSR-containing clones show different abundance patterns. Rapidly evolving hypomethylated DNA may contribute to intraspecific genomic differentiation. Nonrandom distribution patterns of multiple loci detected by 357 probes suggest ancient chromosomal duplication followed by extensive rearrangement and gene loss. Exemplifying the value of these data for comparative genomics, we support and extend prior findings regarding maize-sorghum synteny-in particular, 45% of comparative loci fall outside the inferred colinear/syntenic regions, suggesting that many small rearrangements have occurred since maize-sorghum divergence. These genetically anchored sequence-tagged sites will foster many structural, functional and evolutionary genomic studies in major food, feed, and biomass crops.
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