Evidence map›Paper›PMID 14500463›Full record

ArticleInfection and immunity2003

Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients.

Young Ran Kim, Shee Eun Lee, Choon Mee Kim, Soo Young Kim, Eun Kyoung Shin, Dong Hyeon Shin, Sun Sik Chung, Hyon E Choy, Ann Progulske-Fox, Jeffrey D Hillman and 2 more

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed, 276 citations in OpenAlex.

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  10. Identification of potential pathogenic targets and survival strategies ofFrontiers in cellular and infection microbiology · 2023
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  11. Current research in microbial sciences · 2023
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  15. Metabolites · 2021
    Article
  16. Microbiology (Reading, England) · 2020
    Article
  17. Review
  18. Article
  19. Article
  20. Article

75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Young Ran KimNational Research Laboratory of Molecular Microbial Pathogenesis, Institute of Vibrio Infection, Genome Research Center for Enteropathogenic Bacteria, Chonnam National University Medical School, 5 Hak-Dong, Dong-Ku, Kwangju 501-746, South Korea.
Shee Eun Lee
Choon Mee Kim
Soo Young Kim
Eun Kyoung Shin
Dong Hyeon Shin
Sun Sik Chung
Hyon E Choy
Ann Progulske-Fox
Jeffrey D Hillman
Martin Handfield
Joon Haeng Rhee
Chonnam National University · KRUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many important virulence genes of pathogenic bacteria are preferentially expressed in vivo. We used the recently developed in vivo-induced antigen technology (IVIAT) to identify Vibrio vulnificus genes induced in vivo. An expression library of V. vulnificus was screened by colony blot analysis by using pooled convalescent-phase serum that had been thoroughly adsorbed with in vitro-expressed V. vulnificus whole cells and lysates. Twelve clones were selected, and the sequences of the insert DNAs were analyzed. The DNA sequences showed homologies with genes encoding proteins of diverse functions: these functions included chemotaxis (a methyl-accepting chemotaxis protein), signaling (a GGDEF-containing protein and a putative serine/threonine kinase), biosynthesis and metabolism (PyrH, PurH, and IlvC), secretion (TatB and plasmid Achromobacter secretion [PAS] factor), transcriptional activation (IlvY and HlyU), and the activity of a putative lipoprotein (YaeC). In addition, one identified open reading frame encoded a hypothetical protein. Isogenic mutants of the 12 in vivo-expressed (ive) genes were constructed and tested for cytotoxicity. Cytotoxic activity of the mutant strains, as measured by lactate dehydrogenase release from HeLa cells, was nearly abolished in pyrH, purH, and hlyU mutants. The intraperitoneal 50% lethal dose in mice increased by ca. 10- to 50-fold in these three mutants. PyrH and PurH seem to be essential for in vivo growth. HlyU appears to be one of the master regulators of in vivo virulence expression. The successful identification of ive genes responsible for the in vivo bacterial virulence, as done in the present study, demonstrates the usefulness of IVIAT for the detection of new virulence genes.

Indexed as

AnimalsAntigens, BacterialBacterial ProteinsBase SequenceDNA, BacterialFemaleGene ExpressionGenes, BacterialHeLa CellsHumansMaleMiceMiddle AgedMolecular Sequence DataMutationOpen Reading FramesAntigens, BacterialBacterial ProteinsDNA, Bacterial

Identifiers

PMID14500463
PMCPMC201039
OpenAlexW2096803923

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.