Evidence map›Paper›PMID 1425571›Full record

ArticleThe EMBO journal1992

What limits affinity maturation of antibodies in Xenopus--the rate of somatic mutation or the ability to select mutants?

M Wilson, E Hsu, A Marcuz, M Courtet, L Du Pasquier, C Steinberg

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 1992. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 178 citations in OpenAlex.

  1. Review
  2. Article
  3. The amphibian immune system.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. A cold-blooded view of adaptive immunity.Nature reviews. Immunology · 2018
    Review
  10. Review
  11. Frog's DCs have it all in one.European journal of immunology · 2018
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

M WilsonBasel Institute for Immunology, Switzerland.
E Hsu
A Marcuz
M Courtet
L Du Pasquier
C Steinberg
Institute of Molecular and Clinical Ophthalmology Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although the Xenopus immunoglobulin heavy chain locus is structurally and functionally similar to mammalian IgH loci, Xenopus antibodies are limited in heterogeneity, and they mature only slightly in affinity during immune responses. During the antibody response of isogenic frogs to DNP-KLH, mu and upsilon cDNA sequences using elements of the VH1 family were cloned, sequenced and compared with germline counterparts. There were zero to four mutations per sequence, mostly single base substitutions, in the framework and CDRs 1 and 2 of VH. No mutations were found in JH. Since the point mutation rate was only 4- to 7-fold lower than that calculated for mice, affinity maturation does not seem to be limited by mutant availability. Because of a relatively low ratio of replacement to silent mutations in the CDRs and a very high ratio of GC to AT base pairs altered by mutation, it is suggested that the problem results from the absence of an effective mechanism for selecting mutants, which in turn might be related to the absence of germinal centers in Xenopus.

Indexed as

MutationAmino Acid SequenceAnimalsAntibody FormationBase SequenceDNADNA Mutational AnalysisHemocyaninsImmunoglobulin Heavy ChainsMolecular Sequence DataPolymerase Chain ReactionXenopus laevisDNAHemocyaninsImmunoglobulin Heavy Chainskeyhole-limpet hemocyanin

Identifiers

PMID1425571
PMCPMC557007
OpenAlexW2396823695

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.