Evidence map›Paper›PMID 1371250›Full record

ArticleThe EMBO journal1992

CpG methylated minichromosomes become inaccessible for V(D)J recombination after undergoing replication.

C L Hsieh, M R Lieber

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 1992. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 164 citations in OpenAlex.

  1. Article
  2. Histone methylation and V(D)J recombination.International journal of hematology · 2014
    Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. A multistep mechanism for the activation of rearrangement in the immune system.Proceedings of the National Academy of Sciences of the United States of America · 2003
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. V(D)J recombination is not activated by demethylation of the kappa locus.Proceedings of the National Academy of Sciences of the United States of America · 2000
    Article
  19. Article
  20. Chromatin remodeling directly activates V(D)J recombination.Proceedings of the National Academy of Sciences of the United States of America · 1999
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

C L HsiehDepartment of Pathology, Stanford University School of Medicine, CA 94305-5324.
M R Lieber
Stanford University · US

Funding

MECHANISMS OF HUMAN LYMPHOID CHROMOSOMAL TRANSLOCATIONR37CA051105 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LIEBER, MICHAEL R · 2005 to 2011
$2.0M
HUMAN VDJ RECOMBINASE IN NEOPLASTIC AND PRIMARY CELLSR01CA051105 · NCI · WASHINGTON UNIVERSITY · PI LIEBER, MICHAEL R · 1990 to 2004
$1.6M
NCI NIH HHS CA51105NIGMS NIH HHS GM43236
6 · The paper itself

Abstract

The physical parameters controlling the accessibility of antigen receptor loci to the V(D)J recombination activity are unknown. We have used minichromosome substrates to study the role that CpG methylation might play in controlling V(D)J recombination site accessibility. We find that CpG methylation decreases the V(D)J recombination of these substrates more than 100-fold. The decrease correlates with a considerable increase in resistance to endonuclease digestion of the methylated minichromosome DNA. The minichromosomes acquire resistance to both the intracellular V(D)J recombinase and exogenous endonuclease only after DNA replication. Therefore, CpG methylation specifies a chromatin structure that, upon DNA replication, is resistant to eukaryotic site-specific recombination. These findings are important to V(D)J recombination as well as to the chromatin assembly of methylated DNA during replication.

Indexed as

DNA ReplicationRecombination, GeneticAnimalsCell Line, TransformedChromatinChromosome MappingChromosomesDeoxyribonuclease HpaIIDeoxyribonucleases, Type II Site-SpecificDNA-Cytosine MethylasesGene Expression Regulation, ViralGenetic VariationMiceModels, GeneticPolyomavirusReceptors, AntigenChromatinDeoxyribonuclease HpaIIDeoxyribonucleases, Type II Site-SpecificDNA-Cytosine MethylasesReceptors, Antigen

Identifiers

PMID1371250
PMCPMC556452
OpenAlexW1515872856

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.