Evidence map›Paper›PMID 13680153›Full record

ArticleCurrent genetics2003

The Aa-Pri4 gene, specifically expressed during fruiting initiation in the Agrocybe aegerita complex, contains an unusual CT-rich leader intron within the 5' uncoding region.

Pascal Sirand-Pugnet, Cruz Santos, Jacques Labarère

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Current genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Pascal Sirand-PugnetLaboratoire de Génétique et d'Amélioration des Champignons Cultivés, University Victor Segalen, Bordeaux 2 INRA, C.R.A. de Bordeaux, B.P. 81, 33883 Villenave d'Ornon Cedex, France.
Cruz Santos
Jacques Labarère
Institut National de la Recherche Agronomique · MAUnité de Recherche Œnologie · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Aa1-Pri4 gene was cloned from the edible mushroom Agrocybe aegerita. The gene, specifically expressed during fruiting initiation, encodes a glycine-rich protein of 116 amino acids, with no homology to already known proteins. Homologous genes were amplified from two other strains belonging to the Agr. aegerita complex and originating from South-East Asia; and a comparison of the three genes revealed a high conservation of the coding sequences (72.8-97.8%). The PRI4 putative protein sequences were highly similar (87.5-100.0%); and all of them contained two protein kinase C sites, suggesting a potential supplementary regulation by phosphorylation at the protein level. The 5' uncoding regions all presented a leader intron, very variable in sequence (45.7% identity), but with a high C+T content (74.5-79.0%). The presence of such CT-rich sequences previously described in the promoter of highly expressed fungal genes suggests that the leader intron of the Aa1-Pri4 gene could be involved in the high-level, stage-specific expression.

Indexed as

Gene Expression ProfilingAgaricalesAmino Acid SequenceBase CompositionBase SequenceBlotting, NorthernDNA PrimersFranceFungal ProteinsGene ComponentsIntronsMolecular Sequence DataPlasmidsPromoter Regions, GeneticReproductionReverse Transcriptase Polymerase Chain ReactionDNA PrimersFungal Proteins

Identifiers

PMID13680153
OpenAlexW2043019976

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.