Evidence map›Paper›PMID 13679579›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Competing ligands stabilize alternate conformations of the energy coupling motif of a TonB-dependent outer membrane transporter.

Gail E Fanucci, Nathalie Cadieux, Robert J Kadner, David S Cafiso

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Review
  3. HDX-MS performed on BtuB inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Vitamin BBiophysical journal · 2021
    Article
  5. Article
  6. Article
  7. Structure and Stoichiometry of the Ton Molecular Motor.International journal of molecular sciences · 2020
    Review
  8. Article
  9. Characterization of and lipopolysaccharide binding to the E. coli LptC protein dimer.Protein science : a publication of the Protein Society · 2018
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Ras nanoclusters: molecular structure and assembly.Seminars in cell & developmental biology · 2007
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Gail E FanucciDepartment of Chemistry, University of Virginia, Charlottesville, VA 22904, USA.
Nathalie Cadieux
Robert J Kadner
David S Cafiso
University of Virginia · US

Funding

MOLECULAR MECHANISMS OF MEMBRANE TRANSPORTR01GM035215 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI DAVID S CAFISO · 1985 to 2026
$7.3M
TRANSPORT OF VITAMIN B12 IN E.COLIR01GM019078 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI NAKAMOTO, ROBERT K. · 1985 to 2007
$2.6M
SHARED HPLC SYSTEM FOR HYDROXPROLINE QUANTITATIONR01GM020298 · NIGMS · VIRGINIA COMMONWEALTH UNIVERSITY · PI COHEN, IRWIN KELMAN · 1985 to 2004
$1.2M
NOVEL PREPARATION METHOD FOR ALIGNED MEMBRANE PROTEINSF32GM020298 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI FANUCCI, GAIL E · 2000 to 2002
$119k
INTEGRIN RECYCLING AND NEUTROPHIL MIGRATIONF32GM019078 · NIGMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI PIERINI, LYNDA M · 1997 to 1999
–
NIGMS NIH HHS F32 GM019078NIGMS NIH HHS F32 GM020298NIGMS NIH HHS GM19078NIGMS NIH HHS GM20298NIGMS NIH HHS GM35215NIGMS NIH HHS R01 GM019078NIGMS NIH HHS R01 GM020298NIGMS NIH HHS R01 GM035215
6 · The paper itself

Abstract

BtuB is a TonB-dependent outer-membrane transporter for vitamin B12 (or cyanocobalamin, CN-Cbl) in Escherichia coli. The binding of CN-Cbl is believed to promote an unfolding or undocking of the Ton box, the conserved N-terminal energy coupling motif at the periplasmic surface of the transporter. This structural change may facilitate the interaction of BtuB with the inner membrane protein TonB. In this work, the effect of the receptor binding fragment of colicin E3 (E3R) on the conformation of the Ton box was examined with site-directed spin labeling. Addition of E3R reverses the undocking of the Ton box that is promoted by CN-Cbl, consistent with a competitive binding between the substrate and the colicin fragment. EPR spectroscopy indicates that the Ton box is in a two-state equilibrium between docked and undocked conformations. In the absence of substrate, the docked conformation is the predominant state; however, the equilibrium can be shifted to the undocked state by the addition of detergents or site-specific proline substitutions. Even when the undocking is induced by detergents or by certain proline mutations, E3R binding shifts the equilibrium to the docked conformation. Thus, two competitive extracellular ligands, CN-Cbl and ER3, transduce opposite conformations of the N-terminal Ton box. Substrate binding stabilizes an undocked conformation, whereas E3R binding stabilizes a docked conformation of the Ton box.

Indexed as

Escherichia coli ProteinsBacterial ProteinsBiological TransportElectron Spin Resonance SpectroscopyLigandsMembrane ProteinsProtein ConformationBacterial ProteinsEscherichia coli ProteinsLigandsMembrane ProteinstonB protein, BacteriatonB protein, E coli

Identifiers

PMID13679579
PMCPMC208766
OpenAlexW2132120076

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.