Evidence map›Paper›PMID 1329039›Full record

ArticleNucleic acids research1992

Different E-box regulatory sequences are functionally distinct when placed within the context of the troponin I enhancer.

K E Yutzey, S F Konieczny

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 1992. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 43 citations in OpenAlex.

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  5. Excitation-transcription coupling in skeletal muscle: the molecular pathways of exercise.Biological reviews of the Cambridge Philosophical Society · 2011
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  10. RNA interference of achaete-scute homolog 1 in mouse prostate neuroendocrine cells reveals its gene targets and DNA binding sites.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

K E YutzeyDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.
S F Konieczny
Purdue University West Lafayette · US

Funding

REGULATORY ELEMENTS CONTROLLING TROPONIN I EXPRESSIONR01HD025518 · NICHD · PURDUE UNIVERSITY WEST LAFAYETTE · PI KONIECZNY, STEPHEN F · 1989 to 1993
–
NICHD NIH HHS HD25518
6 · The paper itself

Abstract

Basic helix-loop-helix (bHLH) regulatory proteins are known to bind to a single DNA consensus sequence referred to as an E-box. The E-box is present in the regulatory elements of many developmentally controlled genes, including most muscle-specific genes such as troponin I (TnI). Although the E-box consensus is minimally defined as CANNTG, the adjacent nucleotides of functional E-boxes are variable for genes regulated by the bHLH proteins. In order to examine how E-box regulatory regions containing different internal and flanking nucleotides function when placed within the context of a single regulatory element, the E-box region (14 bp) present within the TnI enhancer was substituted with the corresponding E-box sequences derived from the muscle-specific M-creatine kinase (MCK) and cardiac alpha-actin regulatory elements as well as from the immunoglobulin kappa (Ig kappa) enhancer. Within the TnI enhancer, the E-box sequence derived from cardiac alpha-actin was inactive whereas the corresponding sequence from the MCK right E-box efficiently restored wild-type enhancer activity in muscle cells. Intermediate levels of gene activity were observed for TnI enhancers containing E-boxes derived from the MCK left E-box site or from the Ig kappa E2 E-box. DNA binding studies of MyoD:E12 protein complexes with each substituted TnI enhancer confirmed that DNA binding activity in vitro mimics the relative strength of the enhancers in vivo. These studies demonstrate that the specific nucleotide composition of individual E-boxes, which are contained within the regulatory elements of most if not all muscle-specific genes, contributes to the complex regulatory mechanisms governing bHLH-mediated gene expression.

Indexed as

Enhancer Elements, GeneticRegulatory Sequences, Nucleic AcidActinsAnimalsBase SequenceCells, CulturedChickensChloramphenicol O-AcetyltransferaseCreatine KinaseGenes, ImmunoglobulinHeartImmunoglobulin kappa-ChainsIsoenzymesMiceMolecular Sequence DataMuscle ProteinsActinsChloramphenicol O-AcetyltransferaseCreatine KinaseImmunoglobulin kappa-ChainsIsoenzymesMuscle ProteinsMyoD ProteinTroponinTroponin I

Identifiers

PMID1329039
PMCPMC334291
OpenAlexW1991653341

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.