Evidence map›Paper›PMID 1319057›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1992

Human cytomegalovirus origin of DNA replication (oriLyt) resides within a highly complex repetitive region.

M J Masse, S Karlin, G A Schachtel, E S Mocarski

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1992. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 90 citations in OpenAlex.

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  15. Importance sampling of word patterns in DNA and protein sequences.Journal of computational biology : a journal of computational molecular cell biology · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

M J MasseDepartment of Microbiology and Immunology, Stanford University, CA 94305-5402.
S Karlin
G A Schachtel
E S Mocarski
Stanford University · US

Funding

CYTOMEGALOVIRUS DNA REPLICATION AND RECOMBINATIONR01AI020211 · NIAID · STANFORD UNIVERSITY · PI EDWARD S MOCARSKI, EDWARD S. · 1985 to 2021
$5.9M
THEORY &APPLIED STUDIES IN EVOLUTIONARY GENETICSR01GM010452 · NIGMS · STANFORD UNIVERSITY · PI KARLIN, SAMUEL · 1985 to 2006
$2.1M
ANALYSIS OF MOLECULAR SEQUENCE DATAR01GM039907 · NIGMS · STANFORD UNIVERSITY · PI KARLIN, SAMUEL · 1988 to 1989
–
NIAID NIH HHS AI20211NIGMS NIH HHS GM10452NIGMS NIH HHS GM39907
6 · The paper itself

Abstract

A global analysis of the 230-kilobase-pair (kbp) human cytomegalovirus genome revealed three regions that were very rich in repeated sequences. The region with the highest content of inverted and direct repeats lies between 92,100 and 93,500 bp, upstream of the gene encoding the single-stranded DNA binding protein. Cloned restriction fragments containing this region were able to replicate when trans-acting factors were provided by virus infection in a transient replication assay. With this assay, the region between 92,210 and 93,715 bp on the viral genome was defined as the minimal replication origin, oriLyt. The sequence composition and repeats within oriLyt were used to divide the region into two domains that may be important in origin function. Sequences flanking either the left or right side of the minimal oriLyt contributed to efficient replication; however, these sequences were not essential for origin function. Thus, the region of the viral genome with the most striking concentration of direct and inverted repeats corresponds to the oriLyt of human cytomegalovirus.

Indexed as

DNA ReplicationGenome, ViralRepetitive Sequences, Nucleic AcidBase SequenceCells, CulturedCloning, MolecularCytomegalovirusDNA-Binding ProteinsHumansMolecular Sequence DataOpen Reading FramesPlasmidsRestriction MappingDNA-Binding Proteins

Identifiers

PMID1319057
PMCPMC49268
OpenAlexW2052812603

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.