Evidence map›Paper›PMID 13129770›Full record

ArticleJournal of neurovirology2003

Molecular analysis of JC virus genotypes circulating among the Italian healthy population.

Elisabetta Pagani, Serena Delbue, Roberta Mancuso, Elisa Borghi, Letizia Tarantini, Pasquale Ferrante

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of neurovirology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Observational
  6. Prevalence of Human Polyomavirus JC and BK in Normal Population.Asian Pacific journal of cancer prevention : APJCP · 2020
    Article
  7. JC Virus andKidney international reports · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Molecular prevalence of JC virus in Tehran, Iran.Gastroenterology and hepatology from bed to bench · 2012
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Elisabetta PaganiLaboratory of Biology, Don C. Gnocchi Foundation ONLUS, IRCCS, Milan, Italy.
Serena Delbue
Roberta Mancuso
Elisa Borghi
Letizia Tarantini
Pasquale Ferrante
University of Milan · ITDon Carlo Gnocchi Foundation · ITIstituti di Ricovero e Cura a Carattere Scientifico · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

JC virus (JCV) is an unique virus, but eight different JCV genotypes and various subtypes have been individuated, with a geographic distribution that has been described in general but still needs to be detailed. To define JCV genotype epidemiology in Italy, the authors collected urine from 211 healthy individuals living in Northern, Central, and Southern Continental Italy, and in the two main Italian islands. As screening, JCV DNA was searched using a polymerase chain reaction (PCR) designed to amplify the highly conserved large T (LT) antigen-coding region. Then, to define JCV genotype and trascriptional control region (TCR) organization, fragments of major capsid protein (VP1) and TCR region were amplified and subjected to nucleotide sequencing. The mean frequency of JCV viruria was of 46%, without differences among the four geographically divided groups and between females and males. JCV types 1 and 4 were the most frequently detected, whereas JCV type 2 was rare, and type 3 was found only in one subject. The low frequency of JCV type 2 contrasts with the reported high frequency of this subtype in progressive multifocal leukoencephalopathy (PML), and supports its specific role in PML. The data indicate that JCV genotype epidemiology in Italy is quite different from that of other European countries; moreover, differences between the various Italian regions have been observed. An unexpected high frequency of a new variant of JCV type 4 with a stable point mutation (C --> G) at nucleotide 1851 was found. Furthermore, all the urinary strains had a TCR showing an archetypal organization.

Indexed as

AdultAgedAged, 80 and overBase SequenceCapsid ProteinsDNA, ViralFemaleGenotypeGeographyHumansItalyJC VirusMaleMiddle AgedReference ValuesWhite PeopleCapsid ProteinsDNA, Viral

Identifiers

PMID13129770
OpenAlexW2033969495

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.