Evidence map›Paper›PMID 12975459›Full record

ArticleThe Journal of experimental medicine2003

Kinetics of steady-state differentiation and mapping of intrathymic-signaling environments by stem cell transplantation in nonirradiated mice.

Helen E Porritt, Kristie Gordon, Howard T Petrie

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
3.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 163 citations in OpenAlex.

  1. Article
  2. Article
  3. Thymic Dendritic Cells Revisited.Immunological reviews · 2025
    Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Transcriptional network dynamics in early T cell development.The Journal of experimental medicine · 2024
    Review
  9. Article
  10. T-cell commitment inheritance-an agent-based multi-scale model.NPJ systems biology and applications · 2024
    Article
  11. A spatial human thymus cell atlas mapped to a continuous tissue axis.bioRxiv : the preprint server for biology · 2023
    Article
  12. Review
  13. Article
  14. Article
  15. AiScience · 2022
    Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Helen E PorrittMemorial Sloan-Kettering, New York, NY 10021, USA.
Kristie Gordon
Howard T Petrie
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Control of precursor thymocyte differentiatonR01AI033940 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PETRIE, HOWARD T. · 2001 to 2009
$2.9M
Control of precursor thymocyte differentiation.R56AI033940 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI PETRIE, HOWARD T. · 2010 to 2010
$486k
CONTROL OF PRECURSOR THYMOCYTE DIFFERENTIATIONR21AI033940 · NIAID · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI PETRIE, HOWARD T. · 2000 to 2000
$322k
SELECTION AND CELL DEATH IN T CELL DEVELOPMENTR29AI033940 · NIAID · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI PETRIE, HOWARD T. · 1994 to 1998
–
NCI NIH HHS CA08748NCI NIH HHS P30 CA008748NIAID NIH HHS AI33940NIAID NIH HHS R01 AI033940NIAID NIH HHS R21 AI033940NIAID NIH HHS R29 AI033940NIAID NIH HHS R56 AI033940
6 · The paper itself

Abstract

Upon thymus entry, thymic-homing progenitors undergo distinct phases of differentiation as they migrate through the cortex to the capsule, suggesting that the signals that induce these differentiation steps may be stratified in corresponding cortical regions. To better define these regions, we transplanted purified stem cells into nonirradiated congenic recipients and followed their differentiation with respect to both tissue location and time. The earliest progenitors (DN1) remained confined to a very narrow region of the cortex for about the first 10 d of intrathymic residence; this region virtually overlaps the sites of thymic entry, suggesting that DN1 cells move very little during this lengthy period of proliferation and lineage commitment. Movement out of this region into the deeper cortex is asynchronous, and corresponds to the appearance of DN2 cells. Differentiation to the DN3 stage correlates with movement across the midpoint of the cortex, indicating that stromal signals that induce functions such as TCR gene rearrangement reside mainly in the outer half of the cortex. The minimum time to reach the capsule, and thus transit to the DP stage, is approximately 13 d, with the average time a few days longer. These findings reveal for the first time the kinetics of steady-state progenitor differentiation in the thymus, as well as defining the boundaries of cortical regions that support different phases of the differentiation process. We also show that the first lineage-positive progeny of transplanted stem cells to appear in the thymus are dendritic cells in the medulla, suggesting that each new wave of new T cell production is preceded by a wave of regulatory cells that home to the medulla and ensure efficient tolerance and selection.

Indexed as

Stem Cell TransplantationAnimalsCell DifferentiationCell MovementDendritic CellsHematopoietic Stem CellsMiceMice, Inbred C57BLSignal TransductionThymus GlandT-LymphocytesTransplantation Chimera

Identifiers

PMID12975459
PMCPMC2194209
OpenAlexW2099130754

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.