Evidence map›Paper›PMID 12974981›Full record

ArticleJournal of biology2003

Systematic identification of regulatory proteins critical for T-cell activation.

Peter Chu, Jorge Pardo, Haoran Zhao, Connie C Li, Erlina Pali, Mary M Shen, Kunbin Qu, Simon X Yu, Betty Cb Huang, Peiwen Yu and 7 more

Open access · goldAbstract read
In one paragraph

Article in Journal of biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 69 citations in OpenAlex.

  1. Trial
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  8. TargetingCancers · 2021
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  10. A Review of the Molecular Pathways Involved in Resistance to BRAF Inhibitors in Patients with Advanced-Stage Melanoma.Medical science monitor : international medical journal of experimental and clinical research · 2020
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  18. Memory CD4+ T-cell-mediated protection depends on secondary effectors that are distinct from and superior to primary effectors.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 3 countries.

Peter Chu *Rigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Jorge Pardo *Rigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Haoran Zhao *Rigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Connie C LiRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Erlina PaliRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Mary M ShenRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Kunbin QuRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Simon X YuRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Betty Cb HuangRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Peiwen YuRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Esteban S MasudaRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Susan M MolineauxRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Frank KolbingerNovartis Pharma AG, S-386.6.25, CH-4002 Basel, Switzerland.
Gregorio AversaNovartis Forschungsinstitut GmbH, Brunner Strasse 59, A-1235 Vienna, Austria.
Jan de VriesNovartis Forschungsinstitut GmbH, Brunner Strasse 59, A-1235 Vienna, Austria.
Donald G PayanRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
X Charlene LiaoRigel Pharmaceuticals Inc., 1180 Veterans Blvd., South San Francisco, CA 94080, USA.
Sunesis (United States) · USRigel (United States) · USNovartis (Austria) · ATNovartis (Switzerland) · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe activation of T cells, mediated by the T-cell receptor (TCR), activates a battery of specific membrane-associated, cytosolic and nuclear proteins. Identifying the signaling proteins downstream of TCR activation will help us to understand the regulation of immune responses and will contribute to developing therapeutic agents that target immune regulation.

resultsIn an effort to identify novel signaling molecules specific for T-cell activation we undertook a large-scale dominant effector genetic screen using retroviral technology. We cloned and characterized 33 distinct genes from over 2,800 clones obtained in a screen of 7 x 108 Jurkat T cells on the basis of a reduction in TCR-activation-induced CD69 expression after expressing retrovirally derived cDNA libraries. We identified known signaling molecules such as Lck, ZAP70, Syk, PLC gamma 1 and SHP-1 (PTP1C) as truncation mutants with dominant-negative or constitutively active functions. We also discovered molecules not previously known to have functions in this pathway, including a novel protein with a RING domain (found in a class of ubiquitin ligases; we call this protein TRAC-1), transmembrane molecules (EDG1, IL-10R alpha and integrin alpha2), cytoplasmic enzymes and adaptors (PAK2, A-Raf-1, TCPTP, Grb7, SH2-B and GG2-1), and cytoskeletal molecules (moesin and vimentin). Furthermore, using truncated Lck, PLC gamma 1, EDG1 and PAK2 mutants as examples, we showed that these dominant immune-regulatory molecules interfere with IL-2 production in human primary lymphocytes.

conclusionsThis study identified important signal regulators in T-cell activation. It also demonstrated a highly efficient strategy for discovering many components of signal transduction pathways and validating them in physiological settings.

Indexed as

Antigens, CDAntigens, Differentiation, T-LymphocyteCD69 AntigensCell Line, TumorGene Expression RegulationGenesHumansJurkat CellsLectins, C-TypeLymphocyte ActivationProteinsReceptors, Antigen, T-CellResearch DesignSignal TransductionT-LymphocytesUp-RegulationAntigens, CDAntigens, Differentiation, T-LymphocyteCD69 AntigensLectins, C-TypeProteinsReceptors, Antigen, T-Cell

Identifiers

PMID12974981
PMCPMC333404
OpenAlexW2138183371

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.