Evidence map›Paper›PMID 12972662›Full record

ArticlePlant physiology2003

Proteomics of Medicago truncatula seed development establishes the time frame of diverse metabolic processes related to reserve accumulation.

Karine Gallardo, Christine Le Signor, Joël Vandekerckhove, Richard D Thompson, Judith Burstin

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
19.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 260 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Transcriptome Shock in Developing Embryos of aInternational journal of molecular sciences · 2023
    Article
  5. OverexpressingInternational journal of molecular sciences · 2023
    Article
  6. Review
  7. Seed Development and Protein Accumulation Patterns in Faba Bean (Journal of agricultural and food chemistry · 2022
    Article
  8. Article
  9. Review
  10. Temperature Regulation of Primary and Secondary Seed Dormancy inInternational journal of molecular sciences · 2020
    Article
  11. Dissecting the Seed Maturation and Germination Processes in the Non-OrthodoxInternational journal of molecular sciences · 2020
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Proteome Map of Pea (International journal of molecular sciences · 2018
    Article
  17. Article
  18. Article
  19. Article
  20. Review

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Karine GallardoUnité de Génétique et Ecophysiologie des Légumineuses, Institut National de la Recherche Agronomique-Dijon, Domaine d'Epoisses, 21110 Bretenières, France. gallardo@epoisses.inra.fr
Christine Le Signor
Joël Vandekerckhove
Richard D Thompson
Judith Burstin
Vlaams Instituut voor Biotechnologie · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We utilized a proteomic approach to investigate seed development in Medicago truncatula, cv Jemalong, line J5 at specific stages of seed filling corresponding to the acquisition of germination capacity and protein deposition. One hundred twenty proteins differing in kinetics of appearance were subjected to matrix-assisted laser desorption ionization time of flight mass spectrometry. These analyses provided peptide mass fingerprint data that identified 84 of them. Some of these proteins had previously been shown to accumulate during seed development in legumes (e.g. legumins, vicilins, convicilins, and lipoxygenases), confirming the validity of M. truncatula as a model for analysis of legume seed filling. The study also revealed proteins presumably involved in cell division during embryogenesis (beta-tubulin and annexin). Their abundance decreased before the accumulation of the major storage protein families, which itself occurs in a specific temporal order: vicilins (14 d after pollination [DAP]), legumins (16 DAP), and convicilins (18 DAP). Furthermore, the study showed an accumulation of enzymes of carbon metabolism (e.g. sucrose synthase, starch synthase) and of proteins involved in embryonic photosynthesis (e.g. chlorophyll a/b binding), which may play a role in providing cofactors for protein/lipid synthesis or for CO2 refixation during seed filling. Correlated with the reserve deposition phase was the accumulation of proteins associated with cell expansion (actin 7 and reversibly glycosylated polypeptide) and of components of the precursor accumulating vesicles, which give rise to a trypsin inhibitor on maturation. Finally, we revealed a differential accumulation of enzymes involved in methionine metabolism (S-adenosyl-methionine synthetase and S-adenosylhomo-cysteine hydrolase) and propose a role for these enzymes in the transition from a highly active to a quiescent state during seed development.

Indexed as

ProteomeDesiccationGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantKineticsMedicagoPlant ProteinsPlastidsSeedsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTranscription, GeneticPlant ProteinsProteome

Identifiers

PMID12972662
PMCPMC219042
OpenAlexW2128251929

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.