Evidence map›Paper›PMID 12970440›Full record

ArticleJournal of virology2003

Access of antibody molecules to the conserved coreceptor binding site on glycoprotein gp120 is sterically restricted on primary human immunodeficiency virus type 1.

Aran F Labrijn, Pascal Poignard, Aarti Raja, Michael B Zwick, Karla Delgado, Michael Franti, James Binley, Veronique Vivona, Christoph Grundner, Chih-Chin Huang and 9 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 234 papers.

0numbers the graph read from it
0cells of the map it votes in
234citing papers in PubMed
5.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

234 citing papers in PubMed, 353 citations in OpenAlex.

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174 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 1 country.

Aran F LabrijnDepartment of Immunology, The Scripps Research Institute, La Jolla, California 92037, USA.
Pascal Poignard
Aarti Raja
Michael B Zwick
Karla Delgado
Michael Franti
James Binley
Veronique Vivona
Christoph Grundner
Chih-Chin Huang
Miro Venturi
Christos J Petropoulos
Terri Wrin
Dimiter S Dimitrov
James Robinson
Peter D Kwong
Richard T Wyatt
Joseph Sodroski
Dennis R Burton
Dana-Farber Cancer Institute · USNational Institutes of Health · USVIR Biotechnology (United States) · USFrederick National Laboratory for Cancer Research · USHarvard University · USScripps Research Institute · USTulane University · US

Funding

HIV-1 ENVELOPE GLYCOPROTEINSR37AI024755 · NIAID · DANA-FARBER CANCER INSTITUTE · PI SODROSKI, JOSEPH G · 1996 to 2015
$11.6M
HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR01AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 1992 to 2013
$5.9M
CORE--VIROLOGYP30AI042848 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HO, DAVID D · 1998 to 2002
$4.3M
MOLECULAR STUDIES OF HIV1 NEUTRALIZING ANTIBODIESR01AI031783 · NIAID · DANA-FARBER CANCER INSTITUTE · PI SODROSKI, JOSEPH G · 1991 to 2007
$2.9M
MOLECULAR INTERACTION BETWEEN HIV1 GP120-CD4 COMPLEXESR01AI041851 · NIAID · DANA-FARBER CANCER INSTITUTE · PI SODROSKI, JOSEPH G · 1997 to 2006
$2.8M
HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR37AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI BURTON, DENNIS R. · 1995 to 2004
$2.4M
VIRAL EVASION AND HIV ENTRY-BLOCKING STRATEGIESR01AI045357 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI BURTON, DENNIS R. · 2000 to 2004
$1.8M
TOPOLOGICAL ANALYSIS OF HIV-1 ENVELOPE GLYCOPROTEINSR01AI039420 · NIAID · DANA-FARBER CANCER INSTITUTE · PI SODROSKI, JOSEPH G · 1996 to 2004
$1.6M
Mechanisms Of Humoral EvasionZ01AI005023 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI KWONG, PETER D · 2002 to 2008
$564k
STABILIZING ENV IN VIRUS-LIKE PARTICLE IMMUNOGENSR21AI049566 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI BINLEY, JAMES M · 2000 to 2001
$520k
ROLE OF THE HTLV-III ENVELOPE GLYCOPROTEIN IN VIRUSR01AI024755 · NIAID · DANA-FARBER CANCER INSTITUTE · PI SODROSKI, JOSEPH G · 1987 to 1995
–
NIAID NIH HHS AI24755NIAID NIH HHS AI31783NIAID NIH HHS AI33292NIAID NIH HHS AI39420NIAID NIH HHS AI41851NIAID NIH HHS AI42848NIAID NIH HHS AI45357NIAID NIH HHS AI49566NIAID NIH HHS P30 AI042848NIAID NIH HHS R01 AI031783NIAID NIH HHS R01 AI033292NIAID NIH HHS R01 AI039420NIAID NIH HHS R01 AI041851NIAID NIH HHS R01 AI045357NIAID NIH HHS R37 AI024755NIAID NIH HHS R37 AI033292
6 · The paper itself

Abstract

Anti-human immunodeficiency virus type 1 (HIV-1) antibodies whose binding to gp120 is enhanced by CD4 binding (CD4i antibodies) are generally considered nonneutralizing for primary HIV-1 isolates. However, a novel CD4i-specific Fab fragment, X5, has recently been found to neutralize a wide range of primary isolates. To investigate the precise nature of the extraordinary neutralizing ability of Fab X5, we evaluated the abilities of different forms (immunoglobulin G [IgG], Fab, and single-chain Fv) of X5 and other CD4i monoclonal antibodies to neutralize a range of primary HIV-1 isolates. Our results show that, for a number of isolates, the size of the neutralizing agent is inversely correlated with its ability to neutralize. Thus, the poor ability of CD4i-specific antibodies to neutralize primary isolates is due, at least in part, to steric factors that limit antibody access to the gp120 epitopes. Studies of temperature-regulated neutralization or fusion-arrested intermediates suggest that the steric effects are important in limiting the binding of IgG to the viral envelope glycoproteins after HIV-1 has engaged CD4 on the target cell membrane. The results identify hurdles in using CD4i epitopes as targets for antibody-mediated neutralization in vaccine design but also indicate that the CD4i regions could be efficiently targeted by small molecule entry inhibitors.

Indexed as

Antibodies, MonoclonalBinding SitesCD4 AntigensEpitopesHIV-1HIV AntibodiesHIV Envelope Protein gp120HumansImmunoglobulin Fab FragmentsImmunoglobulin FragmentsImmunoglobulin GNeutralization TestsReceptors, CCR5Receptors, CXCR4Antibodies, MonoclonalCD4 AntigensEpitopesHIV AntibodiesHIV Envelope Protein gp120Immunoglobulin Fab FragmentsImmunoglobulin Fragmentsimmunoglobulin FvImmunoglobulin GReceptors, CCR5Receptors, CXCR4

Identifiers

PMID12970440
PMCPMC228502
OpenAlexW2126977955

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.