Evidence map›Paper›PMID 12957939›Full record

ArticleApplied and environmental microbiology2003

Filamentous "Epsilonproteobacteria" dominate microbial mats from sulfidic cave springs.

Annette Summers Engel, Natuschka Lee, Megan L Porter, Libby A Stern, Philip C Bennett, Michael Wagner

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Review
  3. Microbial roles in cave biogeochemical cycling.Frontiers in microbiology · 2022
    Review
  4. Review
  5. Article
  6. Article
  7. Freshwater SpongeFrontiers in microbiology · 2019
    Article
  8. Article
  9. Microbiological and Geochemical Survey of COFrontiers in microbiology · 2017
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Benthic bacterial diversity in submerged sinkhole ecosystems.Applied and environmental microbiology · 2010
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Annette Summers EngelResearch Group for Microbial Geochemistry, Department of Geological Sciences, University of Texas at Austin, Austin, Texas 78712, USA. aengel@mail.utexas.edu
Natuschka Lee
Megan L Porter
Libby A Stern
Philip C Bennett
Michael Wagner

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hydrogen sulfide-rich groundwater discharges from springs into Lower Kane Cave, Wyoming, where microbial mats dominated by filamentous morphotypes are found. The full-cycle rRNA approach, including 16S rRNA gene retrieval and fluorescence in situ hybridization (FISH), was used to identify these filaments. The majority of the obtained 16S rRNA gene clones from the mats were affiliated with the "Epsilonproteobacteria" and formed two distinct clusters, designated LKC group I and LKC group II, within this class. Group I was closely related to uncultured environmental clones from petroleum-contaminated groundwater, sulfidic springs, and sulfidic caves (97 to 99% sequence similarity), while group II formed a novel clade moderately related to deep-sea hydrothermal vent symbionts (90 to 94% sequence similarity). FISH with newly designed probes for both groups specifically stained filamentous bacteria within the mats. FISH-based quantification of the two filament groups in six different microbial mat samples from Lower Kane Cave showed that LKC group II dominated five of the six mat communities. This study further expands our perceptions of the diversity and geographic distribution of "Epsilonproteobacteria" in extreme environments and demonstrates their biogeochemical importance in subterranean ecosystems.

Indexed as

PhylogenyWater MicrobiologyBase SequenceBiomassDNA PrimersDNA, RibosomalEnvironmentEpsilonproteobacteriaFresh WaterIn Situ Hybridization, FluorescencePolymerase Chain ReactionRNA, Ribosomal, 16SSulfidesWyomingDNA PrimersDNA, RibosomalRNA, Ribosomal, 16SSulfides

Identifiers

PMID12957939
PMCPMC194925

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.