Evidence map›Paper›PMID 12956525›Full record

ArticlePlant molecular biology2003

Rice gene expression in response to N-acetylchitooligosaccharide elicitor: comprehensive analysis by DNA microarray with randomly selected ESTs.

Chiharu Akimoto-Tomiyama, Katsumi Sakata, Junshi Yazaki, Keiko Nakamura, Fumiko Fujii, Kanako Shimbo, Kimiko Yamamoto, Takuji Sasaki, Naoki Kishimoto, Shoshi Kikuchi and 2 more

Abstract read
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In one paragraph

Article in Plant molecular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
9.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 69 citations in OpenAlex.

  1. Comprehensive Analysis and Functional Verification of theInternational journal of molecular sciences · 2023
    Article
  2. Article
  3. Article
  4. Transcriptome Analysis ofFrontiers in plant science · 2020
    Article
  5. Review
  6. Calcium-Dependent Protein Kinases in Phytohormone Signaling Pathways.International journal of molecular sciences · 2017
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Chitosan in plant protection.Marine drugs · 2010
    Review
  13. Article
  14. CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  15. Article
  16. Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Chiharu Akimoto-TomiyamaDepartment of Biochemistry, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602, Japan. akimotoc@nias.affrc.go.jp
Katsumi Sakata
Junshi Yazaki
Keiko Nakamura
Fumiko Fujii
Kanako Shimbo
Kimiko Yamamoto
Takuji Sasaki
Naoki Kishimoto
Shoshi Kikuchi
Naoto Shibuya
Eiichi Minami
Institute of Agrobiological Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

N-acetylchitooligosaccharides are potent elicitors to suspension-cultured rice cells, inducing a set of defense reactions. Expression of defense-related genes is considered to play an important role in defense reactions, and we employed microarray analysis of 8987 randomly selected expressed sequence tags to analyze the changes in gene expression caused by N-acetylchitooctaose. In this experiment, 166 genes were significantly induced and 93 genes were repressed. RNA gel blot analysis of 16 of these genes confirmed the microarray results. Of the 259 ESTs identified as responsive to N-acetylchytooctaose, 18 genes are related to signal transduction, including five calcium-dependent protein kinases (CDPKs). Among these, three novel CDPKs responsive to N-acetylchitooctaose were isolated.

Indexed as

Amino Acid SequenceBlotting, NorthernCalcium-Calmodulin-Dependent Protein KinasesCells, CulturedExpressed Sequence TagsGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantMolecular Sequence DataOligonucleotide Array Sequence AnalysisOligosaccharidesOryzaProtein KinasesRNA, PlantSequence Homology, Amino AcidCalcium-Calmodulin-Dependent Protein KinasesN-acetylchitooctaoseOligosaccharidesProtein KinasesRNA, Plant

Identifiers

PMID12956525
OpenAlexW284404668

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.