Evidence map›Paper›PMID 12955585›Full record

ArticleJournal of human genetics2003

A promoter SNP (-1323T>C) in G-substrate gene (GSBS) correlates with hypercholesterolemia.

Shuji Ono, Yoichi Ezura, Mitsuru Emi, Yuko Fujita, Daisuke Takada, Keiko Sato, Tomoaki Ishigami, Satoshi Umemura, Kaneo Takahashi, Kouhei Kamimura and 2 more

Open access · bronzeAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Powerful gene-based testing by integrating long-range chromatin interactions and knockoff genotypes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Article
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Shuji OnoDepartment of Molecular Biology, Institute of Gerontology, Nippon Medical School, 1-396 Kosugi-cho, Nakahara-ku, Kawasaki 211-8533, Japan.
Yoichi EzuraDepartment of Molecular Biology, Institute of Gerontology, Nippon Medical School, 1-396 Kosugi-cho, Nakahara-ku, Kawasaki 211-8533, Japan.
Mitsuru EmiDepartment of Molecular Biology, Institute of Gerontology, Nippon Medical School, 1-396 Kosugi-cho, Nakahara-ku, Kawasaki 211-8533, Japan. memi@nms.ac.jp.
Yuko Fujita
Daisuke TakadaDepartment of Molecular Biology, Institute of Gerontology, Nippon Medical School, 1-396 Kosugi-cho, Nakahara-ku, Kawasaki 211-8533, Japan.
Keiko SatoSecond Department of Internal Medicine, Yokohama City University School of Medicine, Yokohama, Japan.
Tomoaki IshigamiSecond Department of Internal Medicine, Yokohama City University School of Medicine, Yokohama, Japan.
Satoshi UmemuraSecond Department of Internal Medicine, Yokohama City University School of Medicine, Yokohama, Japan.
Kaneo TakahashiAwa Medical Association Hospital, Chiba, Japan.
Kouhei KamimuraAwa Medical Association Hospital, Chiba, Japan.
Hideaki BujoDepartment of Genome Research and Clinical Application, Chiba University Graduate School, Chiba, Japan.
Yasushi SaitoDepartment of Clinical Cell Biology, Chiba University Graduate School, Chiba, Japan.
Nippon Medical School · JPYokohama City University · JPChiba University · JPJapan Hospital Association · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Factors predisposing to the phenotypic features of higher total cholesterol (TC) have not been clearly defined. Here we report an association between a promoter SNP (-1323T>C) in G-substrate gene (GSBS) and TC levels in 368 adult individuals from an east-central area of Japan. Age and gender-adjusted levels of LDL-cholesterol, TG, TC, and HDL-cholesterol were analyzed. When we separate the subjects into two genotypic groups regarding T allele, those who bear the T allele had significantly higher plasma TC levels than the others who lack the T allele (mean; 239.6 mg/dl vs. 210.6 mg/dl; p=0.003; Mann-Whitney test). Of the 341 individuals with the T allele, approximately 80% individuals presented with hypercholesterolemia, whereas only 44% were hypercholesterolemic among the 27 individuals without the T allele (p=0.0001). These results indicate a significant elevating effect of plasma TC levels by a SNP in the putative regulatory region of the G-substrate gene in our studied population. These data suggest that genetic variation at the G-substrate gene may be one of the determinants for plasma lipoprotein levels.

Indexed as

CholesterolCholesterol, HDLCholesterol, LDLCohort StudiesDNA Mutational AnalysisFemaleGenotypeHumansHypercholesterolemiaJapanMaleMiddle AgedNerve Tissue ProteinsPhenotypePolymerase Chain ReactionPolymorphism, Single NucleotideCholesterolCholesterol, HDLCholesterol, LDLG-substrateNerve Tissue ProteinsProtein KinasesTriglycerides

Identifiers

PMID12955585
OpenAlexW1990279037

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.