Evidence map›Paper›PMID 12953114›Full record

ArticleThe Plant cell2003

Transcript profiling coupled with spatial expression analyses reveals genes involved in distinct developmental stages of an arbuscular mycorrhizal symbiosis.

Jinyuan Liu, Laura A Blaylock, Gabriella Endre, Jennifer Cho, Christopher D Town, Kathryn A VandenBosch, Maria J Harrison

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
27.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 337 citations in OpenAlex.

  1. Article
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  7. Frontiers in plant science · 2021
    Review
  8. Unique and common traits in mycorrhizal symbioses.Nature reviews. Microbiology · 2020
    Review
  9. Review
  10. Whole-genome resequencing identifies quantitative trait loci associated with mycorrhizal colonization of soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  11. Article
  12. Review
  13. Article
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  15. Review
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  17. Article
  18. Review
  19. Article
  20. Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Jinyuan LiuBoyce Thompson Institute for Plant Research, Ithaca, New York 14853, USA.
Laura A Blaylock
Gabriella Endre
Jennifer Cho
Christopher D Town
Kathryn A VandenBosch
Maria J Harrison
Cornell University · USUniversity of Minnesota · USIthaca College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The formation of symbiotic associations with arbuscular mycorrhizal (AM) fungi is a phenomenon common to the majority of vascular flowering plants. Here, we used cDNA arrays to examine transcript profiles in Medicago truncatula roots during the development of an AM symbiosis with Glomus versiforme and during growth under differing phosphorus nutrient regimes. Three percent of the genes examined showed significant changes in transcript levels during the development of the symbiosis. Most genes showing increased transcript levels in mycorrhizal roots showed no changes in response to high phosphorus, suggesting that alterations in transcript levels during symbiosis were a consequence of the AM fungus rather than a secondary effect of improved phosphorus nutrition. Among the mycorrhiza-induced genes, two distinct temporal expression patterns were evident. Members of one group showed an increase in transcripts during the initial period of contact between the symbionts and a subsequent decrease as the symbiosis developed. Defense- and stress-response genes were a significant component of this group. Genes in the second group showed a sustained increase in transcript levels that correlated with the colonization of the root system. The latter group contained a significant proportion of new genes similar to components of signal transduction pathways, suggesting that novel signaling pathways are activated during the development of the symbiosis. Analysis of the spatial expression patterns of two mycorrhiza-induced genes revealed distinct expression patterns consistent with the hypothesis that gene expression in mycorrhizal roots is signaled by both cell-autonomous and cell-nonautonomous signals.

Indexed as

Expressed Sequence TagsGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantMedicagoMolecular Sequence DataMycorrhizaeOligonucleotide Array Sequence AnalysisPhosphatesPlant ProteinsPlant RootsReproducibility of ResultsSignal TransductionSymbiosisPhosphatesPlant Proteins

Identifiers

PMID12953114
PMCPMC181334
OpenAlexW2108372550

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.