Evidence map›Paper›PMID 12952872›Full record

ArticleGenome research2003

Sixty alleles of the ALS7 open reading frame in Candida albicans: ALS7 is a hypermutable contingency locus.

Ningxin Zhang, Annette L Harrex, Barbara R Holland, Lauren E Fenton, Richard D Cannon, Jan Schmid

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 74 citations in OpenAlex.

  1. Context-dependent reprogramming ofFrontiers in microbiology · 2026
    Article
  2. Article
  3. Article
  4. Use of aFrontiers in cellular and infection microbiology · 2024
    Article
  5. Article
  6. Development and Use of a Monoclonal Antibody Specific for theFrontiers in cellular and infection microbiology · 2022
    Article
  7. Article
  8. Peering IntoFrontiers in cellular and infection microbiology · 2022
    Article
  9. Journal of fungi (Basel, Switzerland) · 2021
    Review
  10. Using Genomics to Shape the Definition of the Agglutinin-Like Sequence (Frontiers in cellular and infection microbiology · 2021
    Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Biological Roles of Protein-Coding Tandem Repeats in the YeastJournal of fungi (Basel, Switzerland) · 2018
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ningxin ZhangInstitute of Molecular BioSciences, Massey University, Palmerston North, New Zealand.
Annette L Harrex
Barbara R Holland
Lauren E Fenton
Richard D Cannon
Jan Schmid
University of Otago · NZMassey University · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ALS (agglutinin-like sequence) gene family encodes proteins that play a role in adherence of the yeast Candida albicans to endothelial and epithelial cells. The proteins are proposed as virulence factors for this important fungal pathogen of humans. We analyzed 66 C. albicans strains, representing a worldwide collection of 266 infection-causing isolates, and discovered 60 alleles of the ALS7 open reading frame (ORF). Differences between alleles were largely caused by rearrangements of repeat elements in the so-called tandem repeat domain (21 different types occurred) and the VASES region (19 different types). C. albicans is diploid, and combinations of ALS7 alleles generated 49 different genotypes. ALS7 expression was detected in samples isolated directly from five oral candidosis patients. ORFs in the opposite direction contained within the ALS7 ORF were also transcribed in all strains tested. Isolates representing a more pathogenic general-purpose genotype (GPG) cluster of strains tended to have more tandem repeats than other strains. Two types of VASES regions were largely exclusive to GPG strains; the remaining types were largely exclusive to noncluster strains. Our results provide evidence that ALS7 is a hypermutable contingency locus and important for the success of C. albicans as an opportunistic pathogen of humans.

Indexed as

AllelesGenetic MarkersMutationCandida albicansConserved SequenceFungal ProteinsGene Expression Regulation, FungalGenetic VariationGenotypeMembrane GlycoproteinsMolecular Sequence DataMultigene FamilyOpen Reading FramesPolymorphism, Restriction Fragment LengthRNA, MessengerSpecies SpecificityALS7 protein, Candida albicansFungal ProteinsGenetic MarkersMembrane GlycoproteinsRNA, Messenger

Identifiers

PMID12952872
PMCPMC403672
OpenAlexW2139620187

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.