Evidence map›Paper›PMID 12944473›Full record

ArticleMolecular and cellular biology2003

Insulation of the chicken beta-globin chromosomal domain from a chromatin-condensing protein, MENT.

Natalia E Istomina, Sain S Shushanov, Evelyn M Springhetti, Vadim L Karpov, Igor A Krasheninnikov, Kimberly Stevens, Kenneth S Zaret, Prim B Singh, Sergei A Grigoryev

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Chromatin compaction in terminally differentiated avian blood cells: the role of linker histone H5 and non-histone protein MENT.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2011
    Review
  9. Stefin B interacts with histones and cathepsin L in the nucleus.The Journal of biological chemistry · 2010
    Article
  10. Article
  11. Chromatin condensation in terminally differentiating mouse erythroblasts does not involve special architectural proteins but depends on histone deacetylation.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2009
    Article
  12. Article
  13. The end adjusts the means: heterochromatin remodelling during terminal cell differentiation.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2006
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Natalia E IstominaDepartment of Biochemistry and Molecular Biology, Milton S. Hershey Medical Center, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA.
Sain S Shushanov
Evelyn M Springhetti
Vadim L Karpov
Igor A Krasheninnikov
Kimberly Stevens
Kenneth S Zaret
Prim B Singh
Sergei A Grigoryev
Pennsylvania State University · USFox Chase Cancer Center · USEngelhardt Institute of Molecular Biology · RULomonosov Moscow State University · RURoslin Institute · GB

Funding

TRANS-ACTING FACTORS CAUSING CELL-SPECIFIC GENE CONTROLR01GM036477 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ZARET, KENNETH · 1986 to 2023
$7.7M
Trans-acting Factors Causing Cell Specific Gene ControlR37GM036477 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ZARET, KENNETH · 2006 to 2015
$5.4M
CHROMATIN REMODELING BY MENT DURING HEMOPOIESISR01GM059118 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI GRIGORYEV, SERGEI A · 1999 to 2002
$679k
NIGMS NIH HHS GM 36477NIGMS NIH HHS GM 59118NIGMS NIH HHS R01 GM036477NIGMS NIH HHS R01 GM059118NIGMS NIH HHS R37 GM036477
6 · The paper itself

Abstract

Active genes are insulated from developmentally regulated chromatin condensation in terminally differentiated cells. We mapped the topography of a terminal stage-specific chromatin-condensing protein, MENT, across the active chicken beta-globin domain. We observed two sharp transitions of MENT concentration coinciding with the beta-globin boundary elements. The MENT distribution profile was opposite to that of acetylated core histones but correlated with that of histone H3 dimethylated at lysine 9 (H3me2K9). Ectopic MENT expression in NIH 3T3 cells caused a large-scale and specific remodeling of chromatin marked by H3me2K9. MENT colocalized with H3me2K9 both in chicken erythrocytes and NIH 3T3 cells. Mutational analysis of MENT and experiments with deacetylase inhibitors revealed the essential role of the reaction center loop domain and an inhibitory affect of histone hyperacetylation on the MENT-induced chromatin remodeling in vivo. In vitro, the elimination of the histone H3 N-terminal peptide containing lysine 9 by trypsin blocked chromatin self-association by MENT, while reconstitution with dimethylated but not acetylated N-terminal domain of histone H3 specifically restored chromatin self-association by MENT. We suggest that histone H3 modification at lysine 9 directly regulates chromatin condensation by recruiting MENT to chromatin in a fashion that is spatially constrained from active genes by gene boundary elements and histone hyperacetylation.

Indexed as

Avian ProteinsChickensProtein Structure, Tertiary3T3 CellsAcetylationAnimalsCell DivisionCells, CulturedChromatinChromosomal Proteins, Non-HistoneEnzyme InhibitorsErythrocytesGlobinsHistone Deacetylase InhibitorsHistonesLymphocytesAvian ProteinsChromatinChromosomal Proteins, Non-HistoneEnzyme InhibitorsGlobinsHistone Deacetylase InhibitorsHistonesLysineMENT protein, Gallus gallus

Identifiers

PMID12944473
PMCPMC193700
OpenAlexW2129369591

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.