Evidence map›Paper›PMID 12941889›Full record

ArticleJournal of virology2003

The cap region of topoisomerase I binds to sites near both ends of simian virus 40 T antigen.

Rupa Roy, Pamela Trowbridge, Zheng Yang, James J Champoux, Daniel T Simmons

Abstract read
In one paragraph

Article in Journal of virology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rupa RoyDepartment of Biological Sciences, University of Delaware, Newark, DE 19716-2590, USA.
Pamela Trowbridge
Zheng Yang
James J Champoux
Daniel T Simmons

Funding

THE STRUCTURE AND FUNCTION OF THE SV40 TUMOR ANTIGENR01CA036118 · NCI · UNIVERSITY OF DELAWARE · PI SIMMONS, DANIEL T. · 1985 to 2009
$2.8M
DNA BINDING BY HUMAN TOPOISOMERASE IR01GM060330 · NIGMS · UNIVERSITY OF WASHINGTON · PI CHAMPOUX, JAMES J · 2000 to 2003
$949k
NCI NIH HHS CA 36118NCI NIH HHS R01 CA036118NIGMS NIH HHS GM 60330NIGMS NIH HHS R01 GM060330
6 · The paper itself

Abstract

Two independent binding sites on simian virus 40 (SV40) T antigen for topoisomerase I (topo I) were identified. One was mapped to the N-terminal domain (residues 83 to 160) by a combination of enzyme-linked immunosorbent assays (ELISAs) and glutathione S-transferase (GST) pull-down assays performed with various T antigen deletion mutants. The second was mapped to the C-terminal domain (residues 602 to 708). The region in human topo I that binds to both sites in T antigen was identified by ELISAs, GST pull-down assays, and double-hexamer binding assays with topo I deletion mutants. This region corresponds to a distinct domain on topo I known as the cap region that maps from residues 175 to 433. By combining these data with information about the structure of T-antigen double hexamers associated with origin DNA, we propose that the cap region of topo I associates specifically with both ends of the double hexamer bound to the SV40 origin to initiate DNA replication.

Indexed as

AnimalsAntigens, Polyomavirus TransformingBinding SitesDNA ReplicationDNA Topoisomerases, Type IModels, MolecularSimian virus 40Antigens, Polyomavirus TransformingDNA Topoisomerases, Type I

Identifiers

PMID12941889
PMCPMC224608

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.