Evidence map›Paper›PMID 12939341›Full record

ArticleThe Journal of experimental medicine2003

A naturally selected dimorphism within the HLA-B44 supertype alters class I structure, peptide repertoire, and T cell recognition.

Whitney A Macdonald, Anthony W Purcell, Nicole A Mifsud, Lauren K Ely, David S Williams, Linus Chang, Jeffrey J Gorman, Craig S Clements, Lars Kjer-Nielsen, David M Koelle and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 207 citations in OpenAlex.

  1. Article
  2. HLA micropolymorphisms confine neoantigen conformational adaptability and guide T cell receptor selectivity.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  17. Atomistic structure and dynamics of the human MHC-I peptide-loading complex.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. The molecular basis of how buried human leukocyte antigen polymorphism modulates natural killer cell function.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. HLA Matching in Unrelated Stem Cell Transplantation up to Date.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2019
    Review

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 2 countries.

Whitney A MacdonaldDept. of Microbiology and Immunology, The University of Melbourne, Parkville, Victoria 3010, Australia.
Anthony W Purcell
Nicole A Mifsud
Lauren K Ely
David S Williams
Linus Chang
Jeffrey J Gorman
Craig S Clements
Lars Kjer-Nielsen
David M Koelle
Scott R Burrows
Brian D Tait
Rhonda Holdsworth
Andrew G Brooks
George O Lovrecz
Louis Lu
Jamie Rossjohn
James McCluskey
University of Melbourne · AUHealth Sciences and Nutrition · AUMonash University · AUAustralian Red Cross Lifeblood · AUQIMR Berghofer Medical Research Institute · AUUniversity of Washington · US

Funding

Wellcome Trust
6 · The paper itself

Abstract

HLA-B*4402 and B*4403 are naturally occurring MHC class I alleles that are both found at a high frequency in all human populations, and yet they only differ by one residue on the alpha2 helix (B*4402 Asp156-->B*4403 Leu156). CTLs discriminate between HLA-B*4402 and B*4403, and these allotypes stimulate strong mutual allogeneic responses reflecting their known barrier to hemopoeitic stem cell transplantation. Although HLA-B*4402 and B*4403 share >95% of their peptide repertoire, B*4403 presents more unique peptides than B*4402, consistent with the stronger T cell alloreactivity observed toward B*4403 compared with B*4402. Crystal structures of B*4402 and B*4403 show how the polymorphism at position 156 is completely buried and yet alters both the peptide and the heavy chain conformation, relaxing ligand selection by B*4403 compared with B*4402. Thus, the polymorphism between HLA-B*4402 and B*4403 modifies both peptide repertoire and T cell recognition, and is reflected in the paradoxically powerful alloreactivity that occurs across this "minimal" mismatch. The findings suggest that these closely related class I genes are maintained in diverse human populations through their differential impact on the selection of peptide ligands and the T cell repertoire.

Indexed as

AllelesCell LineCrystallography, X-RayCytokinesGene FrequencyHLA-B44 AntigenHLA-B AntigensHumansLymphocyte Culture Test, MixedModels, MolecularProtein Structure, SecondarySex CharacteristicsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationT-LymphocytesCytokinesHLA-B44 AntigenHLA-B Antigens

Identifiers

PMID12939341
PMCPMC2194191
OpenAlexW2146721994

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.