Evidence map›Paper›PMID 12937144›Full record

ArticleThe American journal of pathology2003

Characterization of gene expression profiles associated with glioma progression using oligonucleotide-based microarray analysis and real-time reverse transcription-polymerase chain reaction.

Jörg van den Boom, Marietta Wolter, Rork Kuick, David E Misek, Andrew S Youkilis, Daniel S Wechsler, Clemens Sommer, Guido Reifenberger, Samir M Hanash

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of pathology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed
8.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 306 citations in OpenAlex.

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  18. Developmental origins and oncogenic pathways in malignant brain tumors.Wiley interdisciplinary reviews. Developmental biology · 2019
    Review
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  20. Article

72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Jörg van den BoomDepartment of Neuropathology, Heinrich-Heine-University, Moorenstrasse 5, D-40225 Düsseldorf, Germany.
Marietta Wolter
Rork Kuick
David E Misek
Andrew S Youkilis
Daniel S Wechsler
Clemens Sommer
Guido Reifenberger
Samir M Hanash
University of Michigan–Ann Arbor · USHeinrich Heine University Düsseldorf · DEAnn Arbor VA Medical Center · USUniversität Ulm · DE

Funding

TOWARDS A MOLECULAR CLASSIFICATION OF TUMORSU19CA084953 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HANASH, SAMIR M · 1999 to 2004
$7.2M
NCI NIH HHS CA 84953NCI NIH HHS U19 CA084953
6 · The paper itself

Abstract

Diffuse astrocytoma of World Health Organization (WHO) grade II has an inherent tendency to spontaneously progress to anaplastic astrocytoma (WHO grade III) and/or glioblastoma (WHO grade IV). The molecular basis of astrocytoma progression is still poorly understood, in particular with respect to the progression-associated changes at the mRNA level. Therefore, we compared the transcriptional profile of approximately 6800 genes in primary WHO grade II gliomas and corresponding recurrent high-grade (WHO grade III or IV) gliomas from eight patients using oligonucleotide-based microarray analysis. We identified 66 genes whose mRNA levels differed significantly (P < 0.01, > or =2-fold change) between the primary and recurrent tumors. The microarray data were corroborated by real-time reverse transcription-polymerase chain reaction analysis of 12 selected genes, including 7 genes with increased expression and 5 genes with reduced expression on progression. In addition, the expression of these 12 genes was determined in an independent series of 43 astrocytic gliomas (9 diffuse astrocytomas, 10 anaplastic astrocytomas, 17 primary, and 7 secondary glioblastomas). These analyses confirmed that the transcript levels of nine of the selected genes (COL4A2, FOXM1, MGP, TOP2A, CENPF, IGFBP4, VEGFA, ADD3, and CAMK2G) differed significantly in WHO grade II astrocytomas as compared to anaplastic astrocytomas and/or glioblastomas. Thus, we identified and validated a set of interesting candidate genes whose differential expression likely plays a role in astrocytoma progression.

Indexed as

Extracellular Matrix ProteinsGene Expression ProfilingAdultBrain NeoplasmsCalcium-Binding ProteinsComputer SystemsDisease ProgressionFemaleForkhead Box Protein M1Forkhead Transcription FactorsGene ExpressionGliomaHumansLoss of HeterozygosityMaleMatrix Gla ProteinCalcium-Binding ProteinsExtracellular Matrix ProteinsForkhead Box Protein M1Forkhead Transcription FactorsFOXM1 protein, humanMatrix Gla ProteinTranscription Factors

Identifiers

PMID12937144
PMCPMC1868272
OpenAlexW2114811646

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.