Evidence map›Paper›PMID 12936992›Full record

ArticleAntimicrobial agents and chemotherapy2003

The aminoglycoside 6'-N-acetyltransferase type Ib encoded by Tn1331 is evenly distributed within the cell's cytoplasm.

Ken J Dery, Britta Søballe, Mavee S L Witherspoon, Duyen Bui, Robert Koch, David J Sherratt, Marcelo E Tolmasky

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.5field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Carbapenemases: TransformingBiomolecules · 2020
    Review
  5. Characterization of Tn6238 with a new allele of aac(6')-Ib-cr.Antimicrobial agents and chemotherapy · 2015
    Article
  6. Article
  7. Aminoglycoside modifying enzymes.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy · 2010
    Review
  8. Functional characterization of Tn1331 gene cassettes.The Journal of antimicrobial chemotherapy · 2008
    Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Ken J DeryDepartment of Biological Science, College of Natural Science and Mathematics, California State University Fullerton, Fullerton, California 92834-6850, USA.
Britta Søballe
Mavee S L Witherspoon
Duyen Bui
Robert Koch
David J Sherratt
Marcelo E Tolmasky
California State University, Fullerton · USUniversity of Oxford · GB

Funding

MINORITY STUDENT DEVELOPMENT AT CSU-FULLERTONR25GM056820 · NIGMS · CALIFORNIA STATE UNIVERSITY FULLERTON · PI GOODE, CHRISTINA A · 1998 to 2005
$2.7M
DEALING WITH ANTIBIOTIC RESISTANCE--ANTISENSE TECHNOLOGYR15AI047115 · NIAID · CALIFORNIA STATE UNIVERSITY FULLERTON · PI TOLMASKY, MARCELO E · 2000 to 2022
$1.8M
LA BASIN CSU MINORITY INTERNATIONAL RESEARCH TRAININGT37TW000048 · FIC · CALIFORNIA STATE UNIVERSITY FULLERTON · PI WEBER, BRUCE H · 1994 to 2004
$897k
FIC NIH HHS T37 TW000048FIC NIH HHS T37 TW00048-05NIAID NIH HHS AI47115-01NIAID NIH HHS R15 AI047115NIGMS NIH HHS R25 GM056820NIGMS NIH HHS R25 GM56820-03Wellcome Trust
6 · The paper itself

Abstract

The multiresistance transposon Tn1331, which mediates resistance to several aminoglycosides and beta-lactams, includes the aac(6')-Ib, aadA1, bla(OXA-9), and bla(TEM-1) genes. The nucleotide sequence of aac(6')-Ib includes a region identical to that of the bla(TEM-1) gene. This region encompasses the promoter and the initiation codon followed by 15 nucleotides. Since there were three possible translation initiation sites, the amino acid sequence at the N terminus of the aminoglycoside 6'-N-acetyltransferase type Ib [AAC(6')-Ib] was determined and was found to be SIQHF. This result indicated that aac(6')-Ib includes a translational fusion: the first five amino acids of the leader peptide of the TEM beta-lactamase are fused to the rest of the AAC(6')-Ib protein. This gene fusion could have formed during the genesis of Tn1331 as a consequence of the generation of a 520-nucleotide duplication (M. E. Tolmasky, Plasmid 24:218-226, 1990). An identical gene isolated from a Serratia marcescens strain has been previously described (G. Tran van Nhieu and E. Collatz, J. Bacteriol. 169:5708-5714, 1987). Extraction of the periplasmic proteins of E. coli harboring aac(6')-Ib by spheroplast formation showed that most of the AAC(6')-Ib protein is present in the cytoplasm. A genetic fusion to phoA confirmed these results. AAC(6')-Ib was shown to be evenly distributed inside the cell's cytoplasm by fluorescent microscopy with an AAC(6')-Ib-cyan fluorescent protein fusion.

Indexed as

AcetyltransferasesAlkaline PhosphataseBacterial ProteinsCytoplasmDNA, BacterialEscherichia coliImmunoblottingMicroscopy, FluorescenceMolecular Sequence DataPlasmidsSubcellular FractionsAcetyltransferasesAlkaline Phosphataseaminoglycoside N(6')-acetyltransferaseBacterial ProteinsDNA, Bacterial

Identifiers

PMID12936992
PMCPMC182613
OpenAlexW2086133656

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.